| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4268325 | NA (NA) | 5 (0.050) | 5/160 | NT | NA | noncoding (9/24 nt) | REP319 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP319 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 4268331 | NA (NA) | noncoding (15/24 nt) | REP319 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP319 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
TATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4268218‑4268325‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggctggGTAGCT‑‑CCAGCCTGCTTTCCTGCATTACATCACCGCAGCAAACGCCTTTGCCACACGTTGTACATTTGCCGTATTTAACCCGGCGACACACATGCGACC < NC_000913/4268331‑4268233 gATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAG < 2:1944118/99‑1TATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAG < 1:1932077/100‑1TATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATCCAGGAAAG < 1:2033731/100‑1 ATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGC > 2:53399/1‑100 ATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGC < 2:2283925/100‑1 TCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCA < 1:2574217/100‑1 CTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAG > 1:1997832/1‑100 CTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAG > 1:2137744/1‑100 CTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAG > 2:1368660/1‑100 CATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGagatc > 1:1944135/1‑95 CATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGC < 2:680804/100‑1 CATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGC < 2:1860589/100‑1 ATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGTGGTGATGTAATGCAGGAAAGCAGGCT < 1:1893333/100‑1 ATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCT < 1:1308317/100‑1 ATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCT < 2:3004009/100‑1 TCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTG > 1:1770376/1‑100 CGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGG < 1:389599/100‑1 CGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGG > 1:648913/1‑100 CGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGG < 2:341502/100‑1 GCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGG < 1:452930/99‑1 GTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGGTAGCT‑‑CCAGCCTGCTT < 1:2707090/100‑1 GTCGCCGGGTTAAATACGGCAAATTTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGGTAGCT‑‑CCAGCCTGC < 2:608930/96‑1 TACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGG‑‑AGCTACCCAGCCTGCTTTCCTGCATTACATCACCGCAGCAAACG > 1:258409/1‑100 ATGTAATGCAGGAAAGCAGGCTGG‑‑AGCTACCCAGCCTGCTTTCCTGCATTACATCACCGCAGCAAACGCCTTTGCCACACGTTGTACATTTGCCGTATTT > 1:1816400/1‑100 TGTAATGCAGGAAAGCAGGCTGG‑‑AGCTACCCAGCCTGCTTTCCTGCATTACATCACCGCAGCAAACGCCTTTGCCACACGTTGTACATTTGCCGTATTTA > 1:2111061/1‑100 gccGGCTGGGTAGCT‑‑CCAGCCTGCTTTCCTGCATTACATCACCGCAGCAAACGCCTTTGCCACACGTTGTACATTTGCCGTATTTAACCCGGCGACACAC > 2:527989/4‑100 GCAGGCTGGGTAGCT‑‑CCAGCCTGCTTTCCTGCATTACATCACCGCAGCAAACGCCTTTGCCACACGTTGTACATTTGCCGTATTTAACCCGGCGACACAC > 1:971121/1‑100 cacGCTGGGTAGCT‑‑CCAGTCTGCTTTCCTTCATTAAATCACCGCAGCAAACGCCTTTGCCACACGTTGTATATTTGCCGTATTTAACCCGGCGACACACA < 2:1276493/97‑1 CAGGCTGGGTAGCT‑‑CGAGCCTGCTTTCCTGCATTACATCACCGCAGCAAACGCCTTTGCCACACGTTGTACATTTGCCGTATTTAACCCGGCGACACACA < 1:3061523/100‑1 CAGGCTGGGTAGCT‑‑CCAGCCTGCTTTCCTGCATTACATCACCGCAGCAAACGCCTTTGCCACACGTTGTACATTTGCCGTATTTAACCCGGCGACACACA < 1:318719/100‑1 AGGCTGGGTAGCT‑‑CCAGCCTGCTTTCCTGCATTACATCACCGCAGCAAACGCCTTTGCCACACGTTGTACATTTGCCGTATTTAACCCGGCGACACACAT < 1:2788751/100‑1 GGCTGGGTAGCT‑‑CCAGCCTGCTTTCCTGCATTACATCACCGCAGCAAACGCCTTTGCCACACGTTGTACATTTGCCGTATTTAACCCGGCGACACACATG > 1:1918186/1‑100 GGGTAGCT‑‑CCAGCCTGCTTTCCTGCATTACATCACCGCAGCAAACGCCTTTGCCACACGTTGTACATTTGCCGTATTTAACCCGGCGACACACATGCGAC > 2:1752383/1‑100 GGTAGCT‑‑CCAGCCTGCTTTCCTGCATTACATCACCGCAGCAAACGCCTTTGCCACACGTTGTACATTTGCCGTATTTAACCCGGCGACACACATGCGACC > 2:1362875/1‑100 GGTAGCT‑‑CCAGCCTGCTTTCCTGCATTACATCACCGCAGCAAACGCCTTTGCCACACGTTGTACATTTGCCGTATTTAACCCGGCGACACACATGCGACC > 2:2243671/1‑100 GGTAGCT‑‑CCAGCCTGCTTTCCTGCATTACATCACCGCAGCAAACGCCTTTGCCACACGTTGTACATTTGCCGTATTTAACCCGGCGACACACATGCGACC < 1:236733/100‑1 TATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4268218‑4268325‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggctggGTAGCT‑‑CCAGCCTGCTTTCCTGCATTACATCACCGCAGCAAACGCCTTTGCCACACGTTGTACATTTGCCGTATTTAACCCGGCGACACACATGCGACC < NC_000913/4268331‑4268233 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |