| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4623777 | 101 (0.930) | 4 (0.040) | 4/164 | NT | 4.0% | coding (341/1017 nt) | lplA | lipoate‑protein ligase A |
| ? | NC_000913 | = 4623789 | 101 (1.010) | coding (329/1017 nt) | lplA | lipoate‑protein ligase A | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
TGGAAGCCGCGATCTTTGGTTTCGCGATAGGCCGAGCCTGAGACTTTGCGGTCGCCTTCGACGGTTTTCACCACCAGATCGTTACGTCCGGACGCTTCGGCGCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4623672‑4623777‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctgaACGCGCTCGGCGTCAGCGCCGAAGCGTCCGGACGTAACGATCTGGTGGTGAAAACCGTCGAAGGCGACCGCAAAGTCTCAGGCTCGGCCTATCGCGAAA < NC_000913/4623789‑4623691 TGGAAGGCGCGATCTTTGGTTTCGCGATAGGCCGAGCCTGAGACTTTGCTGTCGCCTTTGACGGTTTTCACCACCAGATCGTTACGTCCGGACGCTTCGG < 2:1466610/100‑1 GGAAGCCGCGATCTTTGGTTTCGCGATAGGCCGAGCCTGAGACTTTGCGGTCGCCTTCGACGGTTTTCACCACCAGATCGTTACGTCCGGACGCTTCGGC > 2:710371/1‑100 GAAGCCGCGATCTTTGGTTTCGCGATAGGCCGAGCCTGAGACTTTGCGGTCGCCTTCGCCGGTTTTCACCACCAGATCGTTACGTCCGGCCGCTTCGGCG > 2:2598192/1‑100 GAAGCCGCGATCTTTGGTTTCGCGATAGGCCGAGCCTGAGACTTTGCGGTCGCCTTCGACGGTTTTCCCCACCAGATCGTTACGTCCGGACGCTTCGGC < 2:2345528/99‑1 AAGCCGCGATCTTTGGTTTCGCGATAGGCCGAGCCTGAGACTTTGCGGTCGCCTTCGACGGTTTTCACCACCAGATCGTTACGTCCGGACGCTTCGGCGC > 1:46196/1‑100 GCCGCGATCTTTGGTTTCGCGATAGGCCGAGCCTGAGACTTTGCGGTCGCCTTCGACGGTTTTCACCACCAGATCGTTACGTCCGGACGCTTCGGCGCTG > 1:1398789/1‑100 GCCGCGATCTTTGGTTTCGCGATAGGCCGAGCCTGAGACTTTGCGGTCGCCTTCGACGGTTTTCACCACCAGATCGTTACGTCCGGACGCTTCGGCGCTG < 2:2567637/100‑1 CCGCGATCTTTGGTTTCGCGATAGGCCGAGCCTGAGACTTTGCGGTCGCCTTCGACGGTTTTCACCACCAGATCGTTACGTCCGGACGCTTCGGCGCTGA > 1:1428460/1‑100 CCGCGATCTTTGGTTTCGCGATAGGCCGAGCCTGAGACTTTGCGGTCGCCTTCGACGGTTTTCACCACCAGATCGTTACGTCCGGACGCTTCGGCGCTGA > 2:2339534/1‑100 CCGCGATCTTTGGTTTCGCGATAGGCCGAGCCTGAGACTTTGCGGTCGCCTTCGACGGTTTTCACCACCAGATCGTTACGTCCGGACGC‑TCGGCGtcagc > 2:2385540/1‑95 GATCTTTGGTTTCGCGATAGGCCGAGCCTGAGACTTTGCGGTCGCCTTCGACGGTTTTCACCACCAGATCGTTACGTCCGGACGCTTCGGCG < 2:779970/92‑1 CGATAGGCCGAGCCTGAGACTTTGCGGTCGCCTTCGACGGTTTTCACCACCAGATCGTTACGTCCGGACGCTTCGGCGCTGAACGCGCTCGGCGTCAGCG < 1:1984751/100‑1 ttGGCCGAGCCTGAGACTTTGCGGTCGCCGTCGACGGTTTTCACCACCAGATCGTTACGTCCGGACGCTTCGGCGCTGAACGCGCTCGGCGTCAGCGCCG < 1:1120392/98‑1 GGCCGAGCCTGAGACTTTGCGGTCGCCTTCGACGGTTTTCACCACCAGATCGTTACGTCCGGACGCTTCGGCGCTGAACGCGCTCGGCGTCAGCGCCGAA < 1:1654843/100‑1 GCCGAGCCTGAGACTTTGCGGTCGCCTTCGACGGTTTTCACCACCAGATCGTTACGTCCGGACGCTTCGGCGCTGAACGCGCTCGGCGTCAGCGCCGAAG < 1:1162912/100‑1 GCGCTGAACGCGCTCGGCGTCAGCGCCGAAGCGTCCGGACGTAACGATCTGGTGGTGAAAACCGTCGAAGGCGACCGCAAAGTCTCAGGCTCGGCCTATC < 2:2874032/100‑1 CGCTGAACGCGCTCGGCGTCAGCGCCGAAGCGTCCGGACGTAACGATCTGGTGGTGAAAACCGTCGAAGGCGACCGCAAAGTCTCAGGCTCGGCCTATCG < 2:695298/100‑1 CGCTGAACGCGCTCGGCGTCAGCGCCGAAGCGTCCGGACGTAACGATCTGGTGGTGAAAACCGTCGAAGGCGACCGCAAAGTCTCAGGCTCGGCCTATCG > 1:1058725/1‑100 GCTGAACGCGCTCGGCGTCAGCGCCGAAGCGTCCGGACGTAACGATCTGGTGGTGAAAACCGTCGAAGGCGACCGCAAAGTCTCAGGCTCGGCCTATCGC > 1:51229/1‑100 CTGAACGCGCTCGGCGTCAGCGCCGAAGCGTCCGGACGTAACGATCTGGTGGTGAAAACCGTCGAAGGCGACCGCAAAGTCTCAGGCTCGGCCTATCGCG > 2:339098/1‑100 GAACGCGCTCGGCGTCAGCGCCGAAGCGTCCGGACGTAACGATCTGGTGGTGAAAACCGTCGAAGGCGACCGCAAAGTCTCAGGCTCGGCCTATCGCGAA > 1:2661776/1‑100 GAACGCGCTCGGCGTCAGCGCCGAAGCGTCCGGACGTAACGATCTGGTGGTGAAAACCGTCGAAGGCGACCGCAAAGTCTCAGGCTCGGCCTATCGCGAA > 2:265769/1‑100 AACGCGCTCGGCGTCAGCGCCGAAGCGTCCGGACGTAACGATCTGGTGGTGAAAACCGTCGAAGGCGACCGCAAAGTCTCAGGCTCGGCCTATCGCGAAA < 1:2765397/100‑1 AACGCGCTCGGCGTCAGCGCCGAAGCGTCCGGACGTAACGATCTGGTGGTGAAAACCGTCGAAGGCGACCGCAAAGTCTCAGGCTCGGCCTATCGCGAAA < 2:921663/100‑1 TGGAAGCCGCGATCTTTGGTTTCGCGATAGGCCGAGCCTGAGACTTTGCGGTCGCCTTCGACGGTTTTCACCACCAGATCGTTACGTCCGGACGCTTCGGCGCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4623672‑4623777‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctgaACGCGCTCGGCGTCAGCGCCGAAGCGTCCGGACGTAACGATCTGGTGGTGAAAACCGTCGAAGGCGACCGCAAAGTCTCAGGCTCGGCCTATCGCGAAA < NC_000913/4623789‑4623691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |