| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 375232 = | 115 (1.050) | 33 (0.350) +ACGGTGCCGACT |
14/154 | NT | 28.5% | noncoding (303/436 nt) | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 4326206 = | 77 (0.710) | noncoding (405/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
TTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/375296‑375232‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGC > NC_000913/4326206‑4326280 |||||||||||| TTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATAAGACGCGCAAGCGTC > 2:1505120/1‑100TTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCAACTGCCTGATAAGACGCGCAAGCGTC < 1:1385945/100‑1 TATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGAGCCGCataccc > 2:1473414/1‑90 tctGGCCTACAAATTCCCGCACCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCA < 2:2226149/97‑1 ctGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCAACTGCCTGATAAGACGCGCAAGCGTCGCAn < 2:722338/98‑2 nGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCAACTGCCTGATAAGACGCGCAAGCGTCGCATag > 1:722340/2‑98 GGCCTACAAATTCCCGCACCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCAaga > 1:2226169/1‑97 CCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATAAGACGCGCGAGCGTCGCATCAGG < 1:1492784/100‑1 CTACAATTTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGC < 2:672871/100‑1 CTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGC < 1:916512/100‑1 CTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATAAGACGCGCGAGCGTCGCATCAGGC < 2:428391/100‑1 CTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATAAGACGCGCGAGCGTCGCATCAGGC < 1:1250846/100‑1 CTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGACAATGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGC < 2:1730693/100‑1 CTACAAATTCCCGCACCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGC < 1:2876937/100‑1 TACAAATTCCCGCACCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGACGACTGCCTGATAAGACGGGCAAGCGTCGCATCAGGCA < 2:1004970/100‑1 ACAAATTCGCGCACCATCCGTAGGCCGCATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA < 2:968567/99‑1 ACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAG < 1:1505131/100‑1 ACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAG < 2:1712940/100‑1 ACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAG < 1:2970286/100‑1 ACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAG < 2:1722070/100‑1 ACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCAACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAG < 1:1144213/100‑1 ACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCAACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAG < 2:1251754/100‑1 ACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCAACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAG < 1:2375050/100‑1 ACAAATTCCCGCACCCGCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCAACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAG < 2:1842451/100‑1 ACAAATTCCCGCACCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAG < 1:989228/100‑1 CAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAG > 2:1243535/1‑99 AATTCTCGCCTCCTCCGGAGGCCGGATAAGGCGTTTCCGCCGCATCCGGCAACGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGC < 1:2876204/95‑1 AATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCG < 1:2431427/100‑1 AATTCCCGCACCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCG < 1:1512950/100‑1 ATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGG < 1:1243543/100‑1 TTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGC < 2:324948/100‑1 CGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCG < 2:980301/99‑1 GCCGCATCCGGCAACAGTGCCGACTGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTGGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGC > 2:2188186/1‑100 |||||||||||| TTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/375296‑375232‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGC > NC_000913/4326206‑4326280 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |