| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 632119 = | NA (NA) | 5 (0.050) | 4/164 | NT | NA | noncoding (5/34 nt) | REP55 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP55 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 632149 = | NA (NA) | intergenic (+150/‑33) | cstA/ybdD | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein | |||||
CTGACCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/632223‑632119‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATG > NC_000913/632149‑632247 CTGACCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTAT > 1:1265189/1‑100 GACCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCC < 2:2013899/100‑1 GACCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCC > 2:1210585/1‑100 GACCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCC > 1:2330981/1‑100 ACCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCG < 2:2760179/100‑1 CCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGG > 1:1283902/1‑100 CCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGG > 2:914812/1‑100 CCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGG > 1:454754/1‑100 CCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGG > 1:2606628/1‑100 CCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGG > 1:2265185/1‑100 CCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGG > 1:1526973/1‑100 CTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATAAGGCGTTCACGCCGCATCCGGC < 1:2460590/100‑1 AAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCA > 1:1327733/1‑100 CTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATCCACTGGCAAAAGCCGGA > 2:3057082/1‑100 GTGCCGGATGCGGCGTGAACGCCTTATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTT > 1:2820441/1‑100 GTGCCGGATGCGGCGTGAACGCCTTATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTT > 1:1913006/1‑100 GCCGGATGCGGCGTGAACGCCTTATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAG > 1:2460763/1‑100 ATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATT > 1:2811436/1‑100 ATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATT > 2:733115/1‑100 TCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTG > 1:1878905/1‑100 TCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTG > 2:564778/1‑100 CCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGG < 1:2889387/100‑1 CCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGG < 1:2900082/100‑1 CGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGT < 1:169985/100‑1 CGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGT > 1:1530345/1‑100 GGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTA > 1:2866085/1‑100 aCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTAT > 2:891191/2‑100 CACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATG > 2:512800/1‑100 CTGACCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/632223‑632119‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATG > NC_000913/632149‑632247 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |