New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1134653	NA (NA)	7 (0.070)	7/164	NT	NA	noncoding (68/98 nt)	RIP100 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP100 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 1134683	NA (NA)					noncoding (98/98 nt)	RIP100 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP100 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

TAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1134555‑1134653 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGTGCTCGCAAAATCGATAAATTGCGATTGCCCCCATAGACCCGATAAACTTGCGCATCGGGCAACTT  <  NC_000913/1134683‑1134581                                                                                                                                                                                                            TAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTAATCGGGTCTATGGGGGCAATCGCACTTTATCGATTTTGCGAGCACTTGTAGG                                                                                                        >  2:333693/1‑100  AATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGC                                                                                                       >  1:2925379/1‑100    TTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCG                                                                                                     >  2:701572/1‑100    TTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCG                                                                                                     <  1:1052995/100‑1    TTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCG                                                                                                     >  1:250366/1‑100    TTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCG                                                                                                     >  2:2797217/1‑100     TGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGG                                                                                                    <  1:3016107/100‑1     TGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGG                                                                                                    >  2:135694/1‑100      GAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGA                                                                                                   >  2:1776781/1‑100      GAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGA                                                                                                   >  2:1573277/1‑100      GAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTGATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGG                                                                                                    <  1:2908290/99‑1                           AAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATGCGGCGTAAACGCCTTATCC                                                                              <  2:1549144/100‑1                             GTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATGCGGCGTAAACGCCTTATCCGG                                                                            <  1:89248/100‑1                               TGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATGCGGGGTAAACGCCTTATCCGGCC                                                                          <  2:1616836/100‑1                               TGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGC                                                                           <  1:2030134/99‑1                                 CCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCCTA                                                                        <  1:1803129/100‑1                                         GCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAGAAGTGCT                                                                <  1:1628615/100‑1                                                               GGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAGTGCTCGCAAAATCGATAAATTGCGAT                                          >  1:347326/1‑100                                                                                                    GCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGTGCTCGCAAAATCGATAAATTGCGATTGCCCCCATAGACCCGATAAACTTGCGCATCGGGCAA     >  1:1959188/1‑100                                                                                                     CCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGTGCTCGCAAAATCGATAAATTGCGATTGCCCCCATAGACCCGATAAACTTGCGCATCGGGCAAC    >  1:490323/1‑100                                                                                                     CCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGTGCTCGCAAAATCGATAAATTGCGATTGCCCCCATAGACCCGATAAACTTGCGCATCGGGCAAC    >  2:1047354/1‑100                                                                                                     CCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGTGCTCGCAAAATCGATAAATTGCGATTGCCCCCATAGACCCGATAAACTTGCGCATCGGGCAAC    <  1:2043020/100‑1                                                                                                     CCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGTGCTCGCAAAATCGATAAATTGCGATTGCCCCCATAGACCCGATAAACTTGCGCATCGGGCAAC    >  1:1561434/1‑100                                                                                                      CGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGTGCTCGCAAAATCGATAAATTGCGATTGCCCCCATAGACCCGATAAACTTGCGCATCGGGCAACT   <  1:1547810/100‑1                                                                                                       GGATGTGGCGTAAACGCCTTATCCGGCCTACAAGGGCTCTCAAAATCGATAAATTGCGACTGCCCCCATAGACCCGATAAACTTGCGCATCGGGCAACTT  <  2:578481/100‑1                                                                                                       GGATGCGGCGTAAACGCCTTATCCGGCCTACAAGTGCTCGCAAAATCGATAAATTGCGATTGCCCCCATAGACCCGATAAACTTGCGCATCGGGCAACTT  >  2:2353462/1‑100                                                                                                                                                                                                            TAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1134555‑1134653 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGTGCTCGCAAAATCGATAAATTGCGATTGCCCCCATAGACCCGATAAACTTGCGCATCGGGCAACTT  <  NC_000913/1134683‑1134581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.