New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 2169619 = | NA (NA) | 5 (0.050) | 5/166 | NT | NA | intergenic (+8/+74) | yegS/gatR | phosphatidylglycerol kinase, metal‑dependent/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted |
? | NC_000913 | 2169643 = | NA (NA) | intergenic (+32/+50) | yegS/gatR | phosphatidylglycerol kinase, metal‑dependent/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted |
AGACGCGGGTAAAATTAATTACGGTGTAGTATTGTTCTGTATGCCGGATAAGGTGTTTACACCGCATCCGGCATTACGGATTCTCCCTGGTTCAAGAGAGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2169721‑2169619 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagaatCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGTTTATCC > NC_000913/2169643‑2169741 AGACGCGGGTAAAATTAATTACGGTGTAGTATTGTTCTGTATGCCGGATAAGGTGTTTACACCGCATCCGGCATTACGGATTCTCCCTGGTTCAAGAGAG < 2:792078/100‑1 AGACGCGGGTAAAATTAATTACGGTGTAGTATTGTTCTGTATGCCGGATAAGGTGTTTACACCGCATCCGGCATTACGGATTCTCCCTGGTTCAAGAGAG < 1:785973/100‑1 ACGCGGGTAAAATTAATTACGGTGTAGTATTGTTCTGTATGCCGGATAAGGTGTTTACACCGCATCCGGCATTACGGATTCTCCCTGGTTCAAGAGAGAA < 1:1307283/100‑1 ACGCGGGTAAAATTAATTACGGTGTAGTATTGTTCTGTATGCCGGATAAGGTGTTTACACCGCATCCGGCATTACGGATTCTCCCTGGTTCAAGAGAGAA > 1:959121/1‑100 CGCGGGTAAAATTAATTACGGTGTAGTATTGTTCTGTATGCCGGATAAGGTGTTTACACCGCATCCGGCATTACGGATTCTCCCTGGTTCAAGAGAGAAT > 2:331137/1‑100 CGCGGGTAAAATTAATTACGGTGTAGTATTGTTCTGTATGCCGGATAAGGTGTTTACACCGCATCCGGCATTACGGATTCTCCCTGGTTCAAGAGAGAAT > 1:554664/1‑100 CGCGGGTAAAATTAATGACGGTGTAGTATTGGTCTGTATGCCGGATAAGGTGTTTACACCGCATCCGGCATTACGGATTCTCCCTGGTTCAAGAGAGAA < 2:2993333/99‑1 AAATTAATTACGGTGTAGTATTGTTCTGTATGCCGGATAAGGTGTTTACACCGCATCCGGCATTACGGATTCTCTCTTGAACCAGGGAGAATCCGTAATG < 1:732818/100‑1 GCATTACGGATTCTCCCTGGTTCAAGAGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATT > 1:2003266/1‑100 ATTACGGATTCTCCCTGGTTCAAGAGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTT > 1:185852/1‑100 ACGGATTCTCCCTGGTTCAAGAGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACC > 2:1977742/1‑100 CGGATTCTCCCTGGTTCAAGAGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCC > 1:1326756/1‑100 GAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGgt < 1:2112338/100‑3 GAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGTT > 1:854526/1‑100 GAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGTT < 1:738400/100‑1 GAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGTT > 1:1996786/1‑100 AGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGTTT < 2:400853/100‑1 AGAATCAGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCATCTTATGCAATGCCAGTTT > 2:820776/1‑100 GAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGTTTA < 2:796523/100‑1 AATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGTTTAT < 2:2688841/100‑1 ATCCGTAATGCCGGATGCGGTGTAAACATCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGTTTATC < 2:2033797/100‑1 ATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGTTTATC > 1:302245/1‑100 TCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGTTTATCC < 2:2079500/100‑1 AGACGCGGGTAAAATTAATTACGGTGTAGTATTGTTCTGTATGCCGGATAAGGTGTTTACACCGCATCCGGCATTACGGATTCTCCCTGGTTCAAGAGAGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2169721‑2169619 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagaatCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGTTTATCC > NC_000913/2169643‑2169741 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |