| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2340313 = | NA (NA) | 7 (0.070) | 6/164 | NT | NA | noncoding (1/82 nt) | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 2340346 = | NA (NA) | noncoding (34/82 nt) | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
AATCACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2340418‑2340313‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAA > NC_000913/2340346‑2340443 AATCACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCA < 2:1126089/100‑1AATCACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCA < 2:461997/100‑1AATCACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAAAGCCTTATCCGGCCTACGGGCAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCA > 2:1698605/1‑100 TCACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATC < 2:1140300/100‑1 TCACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATC > 1:755265/1‑100 CACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCA < 1:775332/100‑1 CACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCA < 1:2451420/100‑1 CACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATC > 2:933018/1‑99 tCTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAG < 1:2839403/99‑1 tCTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAG < 1:2839421/99‑1 ACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAG > 1:2140138/1‑100 caGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG > 1:2099407/3‑100 CTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG < 2:1055378/100‑1 CTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG < 2:454805/100‑1 GTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGaga > 2:2839374/1‑97 GTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGaga > 2:2839392/1‑97 GGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCG > 1:2197802/1‑100 GTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTA > 1:2228476/1‑100 TAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAG > 1:2834943/1‑100 GGCCTGCTAAGACGCGGCAAGCGTCGCAGCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGACGCATCCGGCAACCGTGCCCACTAcaa > 2:84126/1‑97 GGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGAC > 1:1026542/1‑100 GCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACA > 1:1507201/1‑100 GATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGA > 1:1305641/1‑100 ATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCAagatc > 2:3085035/1‑95 ATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGAC > 1:549034/1‑100 nAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAA > 2:2996915/2‑100 AGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAA < 1:273200/100‑1 GGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAA > 2:2705946/1‑100 GGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAA > 1:2396416/1‑100 GGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCAGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAA > 1:2734609/1‑100 GCCTACAAATGCGCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAA < 1:1385600/100‑1 AATCACTGTCTAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGAGCATTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2340418‑2340313‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAA > NC_000913/2340346‑2340443 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |