| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 271462 | 18 (0.170) | 5 (0.050) | 3/164 | NT | 23.2% | noncoding (922/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 1470194 | NA (NA) | noncoding (899/1221 nt) | IS30 | repeat region | |||||
ATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCC > NC_000913/271364‑271561 | atctcGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGa < 2:299958/96‑1 (MQ=18)aTCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGa < 1:100726/100‑1 (MQ=33) aCGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGaaaa < 2:1438651/100‑1 (MQ=32) cGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGaagat > 1:299960/1‑97 (MQ=18) cGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACAGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAAt > 2:2805916/1‑100 (MQ=18) ttATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCa > 1:1272801/1‑100 (MQ=33) ttATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCa > 1:2399798/1‑100 (MQ=33) ttATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCa < 1:2380111/100‑1 (MQ=33) tataCGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCAc > 1:2262848/1‑100 (MQ=33) tataCGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCAc < 1:2874252/100‑1 (MQ=33) tataCGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCAc < 1:2530525/100‑1 (MQ=33) tataCGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCAc > 1:2300266/1‑100 (MQ=33) ataCGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACt < 2:1104151/100‑1 (MQ=33) taCGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTg < 2:1959270/100‑1 (MQ=32) taCGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTg > 1:1417372/1‑100 (MQ=33) taCGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTg < 1:2975246/100‑1 (MQ=33) aCGATCCTCGTTAGAAGCAGGGGCAAAGATAATGTATCAGTAAATCAGGGTCTTACCGACAAATACATGAGTTTACTGTAAGAACTCAGAAAATCACTGa > 2:92986/1‑100 (MQ=11) aCGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGa < 1:592115/100‑1 (MQ=33) cGATCATCGTTAGACTCAGGAGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGAc > 2:1896972/1‑100 (MQ=18) gATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACa < 2:1422964/100‑1 (MQ=33) atcGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTACATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACATggg < 1:2181134/100‑1 (MQ=18) cGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACATGGGAc < 1:2850482/100‑1 (MQ=31) gTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACATGGGACa < 2:2726553/100‑1 (MQ=11) cTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGgaatttgtcggtaagagcctgattta > 1:168713‑M1/1‑74 (MQ=255) gACAAATTCCTGAGTTTACCGTCAGAACTCAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaacgatgatcgta > 1:1019414‑M1/1‑32 (MQ=255) aaaTTCCTGAGTTTACCGTCAGAACTCAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataac > 1:2621884‑M1/1‑29 (MQ=255) aaTTCCTGAGTTTACCGTCAGAACTCAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacg > 1:2910505‑M1/1‑28 (MQ=255) aaTTCCTGAGTTTACCGTCAGAACTCAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaacgatgatcgtataacg > 1:1343011‑M1/1‑28 (MQ=255) aaCTCAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtccacaagtgt < 2:220886‑M1/100‑94 (MQ=255) aaCTCAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggangatcgtataacgtgattttcggtctacaagtgt < 1:948253‑M1/100‑94 (MQ=255) aCTCAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtg < 1:1830254‑M1/100‑95 (MQ=255) aCTCAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtg < 2:1644221‑M1/100‑95 (MQ=255) aCTCAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtg < 2:192391‑M1/100‑95 (MQ=255) aCTCAGgaatttgtcggtaagagcctgatttactgagacagaatcgttgcccctgattctaaggatgatcgtataacgtgattttcggtctacaagtgtg < 2:2635217‑M1/100‑95 (MQ=255) cTCAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtgg > 2:963065‑M1/1‑5 (MQ=255) cTCAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtgg > 2:583929‑M1/1‑5 (MQ=255) cTCAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtgg > 2:2900489‑M1/1‑5 (MQ=255) cTCAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtgg > 2:1146552‑M1/1‑5 (MQ=255) cTCAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtgg < 2:1544424‑M1/100‑96 (MQ=255) cTCAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtg > 2:738951‑M1/1‑5 (MQ=255) tCAGgaatttgtcggtaagagcctgatttactgatacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtggc < 2:1635503‑M1/100‑97 (MQ=255) tCAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtggc < 2:1910698‑M1/100‑97 (MQ=255) tCAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtggc < 1:608522‑M1/100‑97 (MQ=255) tCAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtggc < 1:2209355‑M1/100‑97 (MQ=255) cAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtggct > 2:1268178‑M1/1‑3 (MQ=255) cAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtggct < 1:229360‑M1/100‑98 (MQ=255) cAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtggct > 1:2860102‑M1/1‑3 (MQ=255) cAGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtggct < 1:660487‑M1/100‑98 (MQ=255) aGgaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtggcta > 2:369341‑M1/1‑2 (MQ=255) ggaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtggctat > 1:760482‑M1/1‑1 (MQ=255) ggaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtggctat > 2:34080‑M1/1‑1 (MQ=255) ggaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtggctat > 2:2599748‑M1/1‑1 (MQ=255) ggaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtggctat > 1:1347611‑M1/1‑1 (MQ=255) ggaatttgtcggtaagagcctgatttactgagacagaatctttgcccctgagtctaaggatgatcgtataacgtgattttcggtctacaagtgtggcta > 2:589863‑M1/1‑1 (MQ=255) | ATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCC > NC_000913/271364‑271561 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |