New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 730041 =0 (0.000)7 (0.070) 6/168 NT 100% coding (459/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3619682 = NA (NA)coding (491/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

CCTGTATTTTGAGCACCTGTTTCCCGGTGAGGACGGTTACAGCCGCAGCGAGTCACTGTGGCTGGTGCGCGGCGGCGTGGCGAAACTGGATGAAGGTCACCGGCTGGCCGCACTCTGGCAGGCGCTGCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTC  >  NC_000913/729942‑730140
                                                                                                   |                                                                                                   
catccgcttccggcacccgctcacaccaaccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttc                                                                                                     <  2:455068‑M1/1‑1 (MQ=255)
 atccgcttccggcacccgctcacaccaaccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttcc                                                                                                    <  1:209696‑M1/2‑1 (MQ=255)
 atccgcttccggcacccgctcacaccaaccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttcc                                                                                                    <  1:2848404‑M1/2‑1 (MQ=255)
 atccgcttccggcacccgctcacaccaaccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttcc                                                                                                    >  2:604106‑M1/99‑100 (MQ=255)
  tccgcttccggcacccgctcacaccaaccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttCCg                                                                                                   >  1:1515443‑M1/98‑100 (MQ=255)
  tccgcttccggcacccgctcacaccaaccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttCCg                                                                                                   <  1:1123170‑M1/3‑1 (MQ=255)
  tccgcttccggcacccgctcacaccaaccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttCCg                                                                                                   >  1:2011313‑M1/98‑100 (MQ=255)
  tccgcttccggcacccgctcacaccaaccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttCCg                                                                                                   <  1:682972‑M1/3‑1 (MQ=255)
   ccgcttccggcacccgctcacaccaaccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttCCgg                                                                                                  <  2:2934055‑M1/4‑1 (MQ=255)
   ccgcttccggcacccgctcacaccaaccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttCCgg                                                                                                  <  2:658157‑M1/4‑1 (MQ=255)
   ccgctgccggcacccgctcacaccaaccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttCCgg                                                                                                  <  2:1403793‑M1/4‑1 (MQ=255)
    cgcttccggcacccgctcacaccaaccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttCCGGc                                                                                                 <  2:2924148‑M1/5‑1 (MQ=255)
    cgcttccggcacccgctcacaccaaccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttCCGGc                                                                                                 >  1:640797‑M1/96‑100 (MQ=255)
    cgcttccggcacccgctcacaccaaccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttCCGGc                                                                                                 <  1:3080428‑M1/5‑1 (MQ=255)
    cgcttccggcacccgctcacaccaaccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttCCGGc                                                                                                 <  1:183018‑M1/5‑1 (MQ=255)
    cgcttccggcacccgctcacaccaaccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatacggacttaagcggagttcttCCGGc                                                                                                 >  2:1728379‑M1/96‑100 (MQ=255)
     gcttccggcacccgctcacaccaaccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttCCGGc                                                                                                 <  2:2901938‑M1/5‑1 (MQ=255)
                              cgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttCCGGCTGGCCGCACTCTGGCAGGCGCTGCCg                                                                       >  1:1513989‑M1/70‑100 (MQ=255)
                              cgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttCCGGC‑‑‑‑CGCACTCTGGCAGTCGCTGCCGgaag                                                                   >  2:974585‑M1/70‑100 (MQ=255)
                               gagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttCCGGCTGGCCGCACTCTGGCAGGCGCTGCCgg                                                                      >  2:2620713‑M1/69‑100 (MQ=255)
                                agcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttCCGGCTGGCCGCACTCTGGCAGGCGCTGCCGga                                                                     >  1:1780549‑M1/68‑100 (MQ=255)
                                 gcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttCCGGCTGGCCGCACTCTGGCAGGCGCTGCCGgaa                                                                    >  2:16806‑M1/67‑100 (MQ=255)
                                  cagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttCCGGCTGGCCGCACTCTGGCAGGCGCTGCCGgaag                                                                   >  2:1164400‑M1/66‑100 (MQ=255)
                                       accacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttCCGGCTGGCCGCACTCTGGCAGGCGCTGCCGGAAGAACTc                                                              >  1:837154‑M1/61‑100 (MQ=255)
                                                                                                   CCGGCTGGCCGCACCCTGGCAGGCGCTGCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTc  <  1:98359‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
CCTGTATTTTGAGCACCTGTTTCCCGGTGAGGACGGTTACAGCCGCAGCGAGTCACTGTGGCTGGTGCGCGGCGGCGTGGCGAAACTGGATGAAGGTCACCGGCTGGCCGCACTCTGGCAGGCGCTGCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTC  >  NC_000913/729942‑730140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.