New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1432881NA (NA)4 (0.040) 3/166 NT NA coding (471/576 nt) tfaR Rac prophage; putative tail fiber assembly protein
?NC_000913 = 1432894 NA (NA)coding (484/576 nt) tfaR Rac prophage; putative tail fiber assembly protein

CGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATTGCAACGGAGGAAGAAATCTCGTTGCTGGAAGCATGGAAAAAGTATCGGGTATTGCT  >  NC_000913/1432783‑1432931
                                                                                                  |                                                  
cgtaTCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATTGCAACgg                                                   >  2:1801604/4‑100 (MQ=1)
                                                  tgcgCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAAGTGCAACGGAGGAAGAAATCTCGTTTCTAAAAAAATAAAAAAAGTATCGGGTATTGCt  <  2:1942881/96‑1 (MQ=1)
                                                                                                  |                                                  
CGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATTGCAACGGAGGAAGAAATCTCGTTGCTGGAAGCATGGAAAAAGTATCGGGTATTGCT  >  NC_000913/1432783‑1432931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.