BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2001998 =	NA (NA)	3 (0.030)	3/164	NT	NA	noncoding (31/99 nt)	RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	NC_000913	= 4254030	NA (NA)	3 (0.030)	3/164	NT	NA	noncoding (130/130 nt)	RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site

Only 100 of 133 total aligned reads displayed.

AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAAT  >  NC_000913/2001899‑2002096

aaaTTCCAGGCAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGcc                                                                                                    <  2:2768048/100‑1 (MQ=255)

aaaTTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGcc                                                                                                    <  2:3088771/100‑1 (MQ=255)

aaaTTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGcc                                                                                                    <  1:270334/100‑1 (MQ=255)

aaaTTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGcc                                                                                                    <  1:2168387/100‑1 (MQ=255)

 aaTTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCt                                                                                                   <  1:1771447/100‑1 (MQ=255)

  aTTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTa                                                                                                  >  1:1369022/1‑100 (MQ=255)

  aTTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTa                                                                                                  >  1:2890632/1‑100 (MQ=255)

  aTTCCAGCCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTa                                                                                                  >  1:1634272/1‑100 (MQ=255)

       aGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaaaa                                                                                             <  1:651169/100‑1 (MQ=255)

         gCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAt                                                                                           >  1:619913/1‑100 (MQ=255)

         gCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAt                                                                                           >  1:2274190/1‑100 (MQ=255)

          cAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCTGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtg                                                                                          >  2:2101815/1‑100 (MQ=255)

          cAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtg                                                                                          <  2:2530297/100‑1 (MQ=255)

          cAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtg                                                                                          >  1:2942854/1‑100 (MQ=255)

          cAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtg                                                                                          >  2:742142/1‑100 (MQ=255)

            gAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtgtg                                                                                        <  1:1594933/100‑1 (MQ=255)

            gAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtgtg                                                                                        >  1:1291364/1‑100 (MQ=255)

            gAAAAAAACCCCCCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCAAGATGCGGCGTACACGCCTTATCCGGCCTACAAAAAtgtg                                                                                        <  2:1913521/100‑1 (MQ=37)

              aaaaaaCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCa                                                                                      >  2:1749273/1‑100 (MQ=255)

              aaaaaaCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCa                                                                                      >  2:575335/1‑100 (MQ=255)

                   aCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTc                                                                                 <  1:388377/100‑1 (MQ=255)

                   aCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACAAAAATGTGCAAATTc                                                                                 <  2:64004/100‑1 (MQ=255)

                    ccccGCCGGTGGCGGGGAAGCATGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCa                                                                                >  2:1803342/1‑100 (MQ=255)

                     cccGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCaa                                                                               >  1:3007512/1‑100 (MQ=255)

                     cccGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCaa                                                                               >  2:2545830/1‑100 (MQ=255)

                     cccGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAAAATGTGCAAATTCaa                                                                               >  1:891694/1‑100 (MQ=255)

                       cgccgGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATa                                                                             >  1:1243603/1‑100 (MQ=255)

                        gccgGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATaa                                                                            >  1:530344/1‑100 (MQ=255)

                        gccgGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATaa                                                                            >  2:2312624/1‑100 (MQ=255)

                          cgGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAAt                                                                          <  2:1320507/100‑1 (MQ=255)

                            gTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAAtt                                                                         <  2:2445394/99‑1 (MQ=255)

                               gCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCaa                                                                     <  2:547941/100‑1 (MQ=255)

                               gCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCaa                                                                     <  2:1243595/100‑1 (MQ=255)

                                cGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAAt                                                                    >  1:2655603/1‑100 (MQ=255)

                                cGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAAt                                                                    >  1:307469/1‑100 (MQ=255)

                                 ggggAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAATCGCCTTATAAAAAAAAAAAAAATGTGCAAATTCAATAAATTGCAAt                                                                    <  2:192167/99‑1 (MQ=25)

                                  gggAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTc                                                                  >  1:2526286/1‑100 (MQ=255)

                                  gggAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTc                                                                  >  1:1993256/1‑100 (MQ=255)

                                     aaGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAAc                                                               <  1:2072188/100‑1 (MQ=255)

                                      aGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACt                                                              >  2:644691/1‑100 (MQ=255)

                                      aGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACt                                                              <  2:2601416/100‑1 (MQ=255)

                                       ggagggtGCGGACGACTTGCGCTTGAGTTGGCCGGATGCGGCGTAAACGGCAGATCCGACCTACAAGAACGTGCAAATACAATACATTGCAGTGCAACtt                                                             <  2:1125101/94‑1 (MQ=2)

                                        cACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTg                                                            >  1:2843811/1‑100 (MQ=255)

                                          cGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTa                                                          >  1:1175317/1‑100 (MQ=255)

                                            ttGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTACCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAgg                                                        <  2:383548/100‑1 (MQ=255)

                                             tGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGc                                                       >  2:1044893/1‑100 (MQ=255)

                                              gCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTGTCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGcc                                                      <  1:1535484/100‑1 (MQ=255)

                                                tGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCt                                                     >  2:1963372/1‑99 (MQ=255)

                                                  aCAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGAt                                                  <  1:2406032/100‑1 (MQ=255)

                                                   cAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGAtg                                                 >  2:1863119/1‑99 (MQ=255)

                                                   cAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATa                                                 >  1:1400298/1‑100 (MQ=255)

                                                   cAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATa                                                 >  2:2056460/1‑100 (MQ=255)

                                                      aTTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagc                                              <  1:676374/100‑1 (MQ=255)

                                                      aTTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagc                                              <  1:2116229/100‑1 (MQ=255)

                                                       ttGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcg                                             <  2:2058720/100‑1 (MQ=255)

                                                       ttGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcg                                             <  2:2058711/100‑1 (MQ=255)

                                                       ttGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcg                                             <  2:399508/100‑1 (MQ=255)

                                                        tGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgc                                            <  1:2131232/100‑1 (MQ=255)

                                                        tGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgc                                            >  2:690593/1‑100 (MQ=255)

                                                        tGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgc                                            >  1:983509/1‑100 (MQ=255)

                                                         gcgcTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgca                                           >  1:2642071/1‑100 (MQ=255)

                                                            cTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcg                                        <  2:1706780/100‑1 (MQ=255)

                                                            cTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcg                                        <  1:1833270/100‑1 (MQ=255)

                                                            cTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcg                                        <  1:1469601/100‑1 (MQ=255)

                                                            cTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcg                                        <  1:1461057/100‑1 (MQ=255)

                                                            cTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcg                                        <  2:2732115/100‑1 (MQ=255)

                                                              ttATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAgcgcagcgca                                      <  1:1746917/100‑1 (MQ=255)

                                                               tATGTTACCGGAGGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagc                                              <  2:2963918/91‑1 (MQ=255)

                                                                aTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCAt                                     <  1:1694911/99‑1 (MQ=255)

                                                                 tGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATc                                    <  2:2621417/99‑1 (MQ=255)

                                                                 tGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCa                                   >  2:1837647/1‑100 (MQ=255)

                                                                 tGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCa                                   <  1:99453/100‑1 (MQ=255)

                                                                 tGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCa                                   <  2:2088222/100‑1 (MQ=255)

                                                                    tGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGc                                >  2:3023221/1‑100 (MQ=255)

                                                                     gCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTAAATAAATTGCAATTCAGCTTGTAGGCCTGATAAGCGCAGCGCATCAGGCa                               >  1:438641/1‑100 (MQ=255)

                                                                       cgtaTGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAAt                             <  2:2657427/97‑1 (MQ=255)

                                                                         gataaggcgtttacgccgcatccggcCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAAttt                           <  2:706172‑M1/74‑1 (MQ=255)

                                                                            gcggcgTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTACAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGc                        <  1:820037/100‑1 (MQ=255)

                                                                             cggcgTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCg                       >  2:531787/1‑100 (MQ=255)

                                                                             cggcgTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCg                       <  2:3009862/100‑1 (MQ=255)

                                                                              ggcgTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGt                      >  1:1228798/1‑100 (MQ=255)

                                                                              ggcgTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGt                      >  1:2312130/1‑100 (MQ=255)

                                                                              ggcgTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGt                      >  1:2568820/1‑100 (MQ=255)

                                                                                cgTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTg                    <  2:1589774/100‑1 (MQ=255)

                                                                                cgTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTg                    <  1:341276/100‑1 (MQ=255)

                                                                                cgTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTg                    <  2:647793/100‑1 (MQ=255)

                                                                                 gTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGc                   <  1:1803357/100‑1 (MQ=255)

                                                                                  tttacgccgcatccggcCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTCGGCCTGATAAGAGCAGCGCATCAGGACATTTGGCGTTGcc                  <  2:2631796‑M1/83‑1 (MQ=255)

                                                                                   aaaCGCCTTATCCGGCCTACAAAAATGTGAAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCg                 <  1:1390573/100‑1 (MQ=255)

                                                                                     aCGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTc               <  1:556401/100‑1 (MQ=255)

                                                                                      cGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCa              >  1:2749535/1‑100 (MQ=255)

                                                                                      cGCCTTATCCGGACTACAAAAATGTGCAAATTCAATAACTTGCAATTCACCTTGTAGGCCTGATAAGCGCAGCGCATCAGGCACTTTGGCGTTGCCGTc               <  1:579661/99‑1 (MQ=21)

                                                                                        ccTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGt            >  2:395101/1‑100 (MQ=255)

                                                                                         cTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAg             <  1:493196/98‑1 (MQ=255)

                                                                                              ccggcCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGt      <  1:28464‑M1/95‑1 (MQ=255)

                                                                                               cggcCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGtt     <  1:367831‑M1/96‑1 (MQ=255)

                                                                                               cggcCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGtt     <  1:2424129‑M1/96‑1 (MQ=255)

                                                                                                ggcCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTa    >  1:844857‑M1/4‑100 (MQ=255)

                                                                                                gcccTAAAAAAATGTGCAAATACACTTAATTTCAATTAAGCTTTTCGGATCGATAACCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCa        <  2:2601304/94‑1 (MQ=19)

                                                                                                  cCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAAt  <  2:2597097‑M1/99‑1 (MQ=255)

AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAAT  >  NC_000913/2001899‑2002096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.