BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2340364	NA (NA)	6 (0.060)	5/164	NT	NA	noncoding (52/82 nt)	REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences
*	?	NC_000913	= 3234723	NA (NA)	6 (0.060)	5/164	NT	NA	noncoding (86/86 nt)	REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 141 total aligned reads displayed.

ATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTGGGCAAAAT  >  NC_000913/2340266‑2340463

aTGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGg                                                                                                    >  2:2228891‑M1/1‑99 (MQ=255)

aTGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGg                                                                                                    <  1:1021793‑M1/100‑2 (MQ=255)

 tgctgcACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGgc                                                                                                   >  1:91360‑M1/1‑98 (MQ=255)

  gctgcACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGgcc                                                                                                  <  2:1522428‑M1/100‑4 (MQ=255)

   ctgcACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGgccg                                                                                                 <  1:2980754‑M1/100‑5 (MQ=255)

    tgcACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGgccgg                                                                                                >  1:1438090‑M1/1‑95 (MQ=255)

     gcACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCATTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGgccg                                                                                                 <  2:2182278‑M1/98‑5 (MQ=255)

     gcACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGgccgga                                                                                               >  1:1984523‑M1/1‑94 (MQ=255)

       acacGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATa                                                                                             <  1:1446704/100‑1 (MQ=255)

        cacGCAGAATAAGTGAGGTTGATGTTTGGCCGCTCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATaa                                                                                            >  2:2052741/1‑100 (MQ=255)

        cacGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATaa                                                                                            >  2:480096/1‑100 (MQ=255)

          cGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAgg                                                                                          >  1:2315748/1‑100 (MQ=255)

          cGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAgg                                                                                          >  2:467631/1‑100 (MQ=255)

           ttccgatctgTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGc                                                                                         <  1:479192/91‑1 (MQ=255)

              gAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGtt                                                                                      >  2:915652/1‑100 (MQ=255)

              gAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGtt                                                                                      >  1:2901119/1‑100 (MQ=255)

               aaTAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGttt                                                                                     <  1:1417017/100‑1 (MQ=255)

                 tAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAc                                                                                   <  2:2275526/100‑1 (MQ=255)

                  aaGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcg                                                                                  >  1:2968211/1‑100 (MQ=255)

                    gTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGcagatcggaa                                                                                >  2:479190/1‑91 (MQ=255)

                    gTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgcc                                                                                >  2:68477/1‑100 (MQ=255)

                     tGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGTCTACAAATGCTACCCGTAGGCCGGATAAGGCGTTTAcgccg                                                                               <  2:402698/100‑1 (MQ=255)

                      ttccgatctGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCGCCCCGTAGGCCGGATAAGGCGTTTAcgccgc                                                                              <  1:582450/92‑1 (MQ=25)

                        ggTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCAt                                                                            >  1:1866052/1‑100 (MQ=255)

                           tGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATc                                                                           >  1:3095726/1‑98 (MQ=255)

                            gATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGgccggatgcggcgtaaacgccttatccgg                                                                        <  1:2503344‑M1/100‑30 (MQ=255)

                             aTGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                       <  1:693313/100‑1 (MQ=255)

                              tGTTTGGCCGCGCCGATTCCTGATGCGACGCTTGCCGCGGCGTATCAGGCCTACAAATGCTCCCCGTAGgccggatgcggcgtaaacgccttatccggc                                                                       <  2:2584871‑M1/99‑31 (MQ=255)

                              tGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                                      >  1:1028570/1‑100 (MQ=255)

                               gTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaa                                                                     >  2:252382/1‑100 (MQ=255)

                                tttGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGgccggatgcggcgtaaacgccttatccggccta                                                                    <  1:2213430‑M1/100‑34 (MQ=255)

                                 ttGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAcc                                                                   <  1:220811/100‑1 (MQ=255)

                                 ttGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAcc                                                                   <  2:1028565/100‑1 (MQ=255)

                                  tGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCg                                                                  <  1:414488/100‑1 (MQ=255)

                                     ccGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGc                                                               >  2:2192246/1‑100 (MQ=255)

                                     ccGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGGTTACGACGCATCCGGCAACCGTg                                                                >  2:317620/1‑99 (MQ=255)

                                      cgcgCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGcc                                                              <  1:2683927/100‑1 (MQ=255)

                                       gcgcCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCg                                                             <  1:2592534/100‑1 (MQ=255)

                                         gcCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGAc                                                           <  2:2096295/100‑1 (MQ=255)

                                          ccAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACt                                                          <  2:2870687/100‑1 (MQ=255)

                                          ccAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCCCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACt                                                          <  1:346520/100‑1 (MQ=255)

                                           gtaggcctgataagacgcggcaagcgtcgcatcaggcCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTa                                                         >  1:2228476‑M2/38‑100 (MQ=255)

                                            taggcctgataagacgcggcaagcgtcgcatcaggcCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAg                                                        >  1:2834943‑M2/37‑100 (MQ=255)

                                              tctCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGAc                                                      >  2:2839374‑M1/4‑100 (MQ=255)

                                              tctCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGAc                                                      >  2:2839392‑M1/4‑100 (MQ=255)

                                              tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGAc                                                      <  2:3061573/100‑1 (MQ=255)

                                              tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGAc                                                      >  1:3061602/1‑100 (MQ=255)

                                              tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGAc                                                      <  1:1202658/100‑1 (MQ=255)

                                              ggcctgataagacgcggcaagcgtcgcatcaggcCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGAc                                                      >  1:1026542‑M2/35‑100 (MQ=255)

                                               gcctgataagacgcggcaagcgtcgcatcaggcCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACa                                                     >  1:1507201‑M2/34‑100 (MQ=255)

                                                CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAg                                                    <  2:454805‑M1/100‑1 (MQ=255)

                                                CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAg                                                    <  2:1055378‑M1/100‑1 (MQ=255)

                                                 ctgctgCGACGCTCGCCGCGTCTTATCAGGCCTACAAACGCTCCCGGTAGGCCGGATAATGCGTTTTTGCCGCTTCCGGCAACCGTGCCGACTAGACAGt                                                   <  2:253546/100‑1 (MQ=25)

                                                 cTGATGCCACGCTTACCACGACTTATCAGGCCAACAAATGCTCCCCGTAGGCCGGACAAGGCGTGTAAGCCGCATCCGGCAACCGTGCCGACTAGCCAGt                                                   >  2:16721/1‑100 (MQ=21)

                                                 CTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACaga                                                   <  1:2839403‑M1/100‑2 (MQ=255)

                                                 CTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGt                                                   >  1:2140138‑M1/1‑100 (MQ=255)

                                                  TGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTg                                                  <  1:2451420‑M1/100‑1 (MQ=255)

                                                  TGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTg                                                  <  1:775332‑M1/100‑1 (MQ=255)

                                                   gataagacgcggcaagcgtcgcatcaggcCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGa                                                 >  1:1305641‑M2/30‑100 (MQ=255)

                                                   GATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTg                                                  >  2:933018‑M1/1‑99 (MQ=255)

                                                   GATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGa                                                 >  1:755265‑M1/1‑100 (MQ=255)

                                                     TGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTGCCCGTAGGCCGGATAAGGCTTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGAtt                                               >  2:1698605‑M1/1‑100 (MQ=255)

                                                     TGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGAtt                                               <  2:1126089‑M1/100‑1 (MQ=255)

                                                      gCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTa                                              <  1:2135777/100‑1 (MQ=255)

                                                        gACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTAcc                                            <  2:1768055/100‑1 (MQ=255)

                                                        gACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTAcc                                            <  2:2315727/100‑1 (MQ=255)

                                                          cGCCTGCCGCGTCTTATCAGGCCTACACATGCACCCGGGAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCAt                                          <  2:298920/100‑1 (MQ=25)

                                                           gCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCAtt                                         >  1:164381/1‑100 (MQ=255)

                                                               gCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCAc                                     >  1:2838892/1‑100 (MQ=255)

                                                                 cgcgTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGGAACCGTGCCGACTAGACAGTGATTACCATTTCACCg                                   <  1:2192266/100‑1 (MQ=255)

                                                                 cgcgTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCg                                   >  1:50300/1‑100 (MQ=255)

                                                                 cgcgTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCAATTCAcc                                    >  2:25996/1‑99 (MQ=255)

                                                                  gcgTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGt                                  >  1:834060/1‑100 (MQ=255)

                                                                    gatctATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCa                                <  1:3085064/96‑1 (MQ=255)

                                                                     tCTTATCCGGCCTACAAATGCTCCCCGCAGTCCGCATAAGGCGCTCACGCCCCATCCTGCAACCGTGCCGCCTAGACAGTGATTACCATTTCACCGTCa                                <  2:2334908/99‑1 (MQ=255)

                                                                       ttATCAGGCCTACAAATGCTCCCCGTAGTCCGGATAATGCGTTTACTCCGCATCCGGCAACCGTGCCGACTATACATTGATTATCATTGCACCGTCATCg                             <  2:2632504/100‑1 (MQ=25)

                                                                       ttATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCg                             >  1:2754047/1‑100 (MQ=255)

                                                                       ttATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCg                             >  2:2654327/1‑100 (MQ=255)

                                                                       ttATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCg                             <  1:252384/100‑1 (MQ=255)

                                                                       ttATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCg                             >  1:2612191/1‑100 (MQ=255)

                                                                        tATCAGGCCTACAAATGCTCCCCGTACGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGTCGACTAGACAGTGATTACCATTTCACCGTCATCGa                            >  1:1394233/1‑100 (MQ=255)

                                                                         atcaggcCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCAccgtcaagatc                           >  2:3085035‑M2/8‑95 (MQ=255)

                                                                           naggcCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACaa                         >  2:2996915‑M2/6‑100 (MQ=255)

                                                                            aggcCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACaaa                        <  1:273200‑M2/96‑1 (MQ=255)

                                                                             ggcCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACaaaa                       >  2:2705946‑M2/4‑100 (MQ=255)

                                                                                cTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAAcc                    >  1:2771616/1‑100 (MQ=255)

                                                                                 tACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAAccc                   >  1:2864620/1‑100 (MQ=255)

                                                                                  aCAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCt                  >  1:1480561/1‑100 (MQ=255)

                                                                                  aCAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGAGATTACCATTTCACCGTCATCGACAAAAAccc                   >  1:2189755/1‑99 (MQ=255)

                                                                                   cAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTg                 <  1:134629/100‑1 (MQ=255)

                                                                                    naaTGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGc                >  2:664118/2‑100 (MQ=255)

                                                                                      aTGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCg              <  1:2337446/100‑1 (MQ=255)

                                                                                       tGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGt             >  2:2260824/1‑100 (MQ=255)

                                                                                          tCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTg          <  1:1140305/100‑1 (MQ=255)

                                                                                            cccGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTggg        <  1:2661103/100‑1 (MQ=255)

                                                                                               gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTGGGCaa     >  1:1522657/1‑100 (MQ=255)

                                                                                                tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTGGGCaaa    >  2:139430/1‑100 (MQ=255)

                                                                                                 aGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTGGGCaaaa   >  1:1235119/1‑100 (MQ=255)

                                                                                                  ggCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTGGGCAAAat  >  1:523590/1‑100 (MQ=255)

                                                                                                  ggCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTGGGCAAAat  <  2:1235111/100‑1 (MQ=255)

ATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTGGGCAAAAT  >  NC_000913/2340266‑2340463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.