BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2430980	NA (NA)	6 (0.060)	5/164	NT	NA	noncoding (52/84 nt)	REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences
*	?	NC_000913	= 2431012	NA (NA)	6 (0.060)	5/164	NT	NA	noncoding (84/84 nt)	REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 139 total aligned reads displayed.

TTCAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCA  >  NC_000913/2430882‑2431079

ttCAACGCGATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGTATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGg                                                                                                    <  2:905424‑M1/100‑2 (MQ=255)

ttCAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGg                                                                                                    <  1:296653‑M1/100‑2 (MQ=255)

ttCAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGg                                                                                                    <  1:751174‑M1/100‑2 (MQ=255)

  cAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCTTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGgcc                                                                                                  <  1:256630‑M1/100‑4 (MQ=255)

  cAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGgcc                                                                                                  <  2:2536695‑M1/100‑4 (MQ=255)

     cGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGgcctga                                                                                               <  2:1611845‑M1/100‑7 (MQ=255)

      gCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGgcctgat                                                                                              <  1:827914‑M1/100‑8 (MQ=255)

      gCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGgcctgat                                                                                              <  2:1157459‑M1/100‑8 (MQ=255)

       ccATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATa                                                                                             >  1:769184/1‑100 (MQ=255)

       ccATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATa                                                                                             <  1:1536209/100‑1 (MQ=255)

        cATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATaa                                                                                            >  1:1280672/1‑100 (MQ=255)

         aTCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAg                                                                                           <  1:1952275/100‑1 (MQ=255)

          tCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGa                                                                                          <  2:2729107/100‑1 (MQ=255)

          tCGACTTTTTATGCCTATGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGa                                                                                          <  2:1818915/100‑1 (MQ=255)

           cGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGAc                                                                                         <  2:769182/100‑1 (MQ=255)

              cTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGAcgcg                                                                                      >  1:1413438/1‑100 (MQ=255)

                ttttATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGcc                                                                                    <  1:1714145/100‑1 (MQ=255)

                       ccTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCg                                                                             <  2:1580695/100‑1 (MQ=255)

                        cTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGc                                                                            <  1:1315597/100‑1 (MQ=255)

                        cTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGc                                                                            <  1:253003/100‑1 (MQ=255)

                         tttGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCA                                                                           >  1:1586449‑M2/1‑100 (MQ=255)

                           tGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGgcctgatgcgacgctggcgcgtcttatc                                                                         <  1:2628631‑M1/100‑29 (MQ=255)

                            gCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCA                                                                        >  2:2168743‑M2/1‑100 (MQ=255)

                              ggCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGgcctgatgcgacgctggcgcgtcttatcagg                                                                      <  1:2859584‑M1/100‑32 (MQ=255)

                               gCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGgcctgatgcgacgctggcgcgtcttatcaggc                                                                     <  1:566918‑M1/100‑33 (MQ=255)

                               gCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC                                                                     >  1:112650‑M2/1‑100 (MQ=255)

                                cATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGgcctgatgcgacgctggcgcgtcttatcaggcc                                                                    <  1:194132‑M1/100‑34 (MQ=255)

                                cATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCa                                                                    >  2:2881360/1‑100 (MQ=255)

                                 aTCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCaa                                                                   >  1:1854663/1‑100 (MQ=255)

                                    gggCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGAc                                                                >  1:75213/1‑100 (MQ=255)

                                      gCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCg                                                              <  1:1492495/100‑1 (MQ=255)

                                         aTGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTAt                                                           <  2:1711059/100‑1 (MQ=255)

                                          tGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTAtt                                                          <  2:587509/100‑1 (MQ=255)

                                             gtgtCGGATGCGTCGTAAACGCCTTATGCGAACTACAGTTCTACCCCTGCGTAGGCCCGATAACACTCGCCACCGTCGCATCAGGCAAGCCCGTATTaa                                                        <  2:1889171/99‑1 (MQ=25)

                                              tgtCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAAtt                                                      <  1:3020339/100‑1 (MQ=255)

                                                tCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTTCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCg                                                    <  2:2502993/100‑1 (MQ=255)

                                                 cGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGgcctgatgcgacgctggcgcgtcttatcaggcctacgcaggggtagaac                                                    <  2:2356574‑M1/99‑50 (MQ=255)

                                                 cGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCgg                                                   <  1:2465797/100‑1 (MQ=255)

                                                 cGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCgg                                                   >  1:2331865/1‑100 (MQ=255)

                                                 cGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCgg                                                   <  2:75211/100‑1 (MQ=255)

                                                 cGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCgg                                                   <  2:771985/100‑1 (MQ=255)

                                                  ggATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGc                                                  <  1:2925248/100‑1 (MQ=255)

                                                  ggATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGc                                                  >  2:838453/1‑100 (MQ=255)

                                                  ggATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGc                                                  >  1:1210671/1‑100 (MQ=255)

                                                   gATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCg                                                 <  2:1558812/100‑1 (MQ=255)

                                                       cggcgTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGtata                                             >  2:3041549/1‑100 (MQ=255)

                                                       cggcgTAAACGCCTTATCCGACCTAAGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCCGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGtata                                             <  1:919324/100‑1 (MQ=255)

                                                        ngcgTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAg                                            >  1:1059815/2‑100 (MQ=255)

                                                        ggcgTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAg                                            <  1:2067109/100‑1 (MQ=255)

                                                        ggcgTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAg                                            <  2:625771/100‑1 (MQ=255)

                                                         gcgTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGc                                           <  1:3019227/100‑1 (MQ=255)

                                                          cgTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCAGCAGGCAAGACCGTATTAATTCGGCGTATAGc                                           <  2:1379599/99‑1 (MQ=255)

                                                           ggaaaCGCCTTATCCGACCTCCGGTGCTACCCTTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCCTCAGGCAAGACCGTATTAATTCGGCGTATAGccc                                         <  2:942713/98‑1 (MQ=37)

                                                           gTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGccc                                         <  1:346456/100‑1 (MQ=255)

                                                            nttaCGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCa                                        >  2:1258873/4‑100 (MQ=255)

                                                              aaCGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCAtt                                      >  1:845074/1‑100 (MQ=255)

                                                              aaCGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCAtt                                      <  1:396267/100‑1 (MQ=255)

                                                                 gCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTAcc                                   >  1:132283/1‑100 (MQ=255)

                                                                  ccTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCAtt                                      <  2:2491787/96‑1 (MQ=255)

                                                                  ccTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTAcc                                   >  2:2632580/1‑99 (MQ=255)

                                                                  ccTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCa                                  >  2:2283301/1‑100 (MQ=255)

                                                                  ccTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCa                                  >  2:1305932/1‑100 (MQ=255)

                                                                   cTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCAc                                 >  2:2250337/1‑100 (MQ=255)

                                                                   cTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCAc                                 >  1:1914444/1‑100 (MQ=255)

                                                                    ttATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACg                                <  1:1987885/100‑1 (MQ=255)

                                                                    ttATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACg                                <  2:2608517/100‑1 (MQ=255)

                                                                     tATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGc                               <  1:2050285/100‑1 (MQ=255)

                                                                      aTCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGcc                              <  1:1110144/100‑1 (MQ=255)

                                                                      aTCCGACCTACGGTTCTACCACTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATCACCACGcc                              >  2:503430/1‑100 (MQ=255)

                                                                        ccGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCAc                            <  1:1583933/100‑1 (MQ=255)

                                                                         cGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACt                           <  1:1454562/100‑1 (MQ=255)

                                                                          gACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGCCGCGCCAGCGTCGCATCAGGCAAGCCCGTCTTAATTCGGCGTATCGCCCATTACCCCGCCACt                           >  2:3022889/1‑99 (MQ=37)

                                                                            ccTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTaa                        <  2:1093276/100‑1 (MQ=255)

                                                                             cTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCACATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAg                       <  2:2147127/100‑1 (MQ=255)

                                                                              tACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGc                      >  2:796005/1‑100 (MQ=255)

                                                                              tACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGc                      >  1:592538/1‑100 (MQ=255)

                                                                              tACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCCACAGCGTCGCATCAGGCAAGACCGTATTAACTCGGCGTATAGCCCATTACCACGCCACTTAAGc                      <  2:916396/100‑1 (MQ=255)

                                                                               aCGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGcc                     <  1:2222236/100‑1 (MQ=255)

                                                                               aCGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGcc                     <  2:1854648/100‑1 (MQ=255)

                                                                                cGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCTATTACCACGCCACTTAAGcc                     <  2:1650301/99‑1 (MQ=255)

                                                                                 ggTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAg                   >  1:1922563/1‑100 (MQ=255)

                                                                                 ggTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAg                   >  1:1309594/1‑100 (MQ=255)

                                                                                  gTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCctacgcaggggtagaaccgtaggtcggataaggcgtttacgccgcatccg                   <  2:2356574‑M2/99‑51 (MQ=255)

                                                                                  gTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGa                  <  2:1131784/100‑1 (MQ=255)

                                                                                    tCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGaaa                >  1:1213166/1‑100 (MQ=255)

                                                                                     cTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAg               <  1:2383084/100‑1 (MQ=255)

                                                                                       aCCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGtt             >  1:17464/1‑100 (MQ=255)

                                                                                        ccccTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGtt             >  1:2505447/1‑99 (MQ=255)

                                                                                        ccccTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTg            >  1:1264605/1‑100 (MQ=255)

                                                                                        ccccTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTg            >  1:2779731/1‑100 (MQ=255)

                                                                                          ccTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCt          >  2:55031/1‑100 (MQ=255)

                                                                                          ccTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCt          >  1:368365/1‑100 (MQ=255)

                                                                                          ccTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCt          >  1:2416960/1‑100 (MQ=255)

                                                                                          ccTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCt          >  2:2443966/1‑100 (MQ=255)

                                                                                            tGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTc        <  2:887523/100‑1 (MQ=255)

                                                                                             gCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCa       >  1:1478165/1‑100 (MQ=255)

                                                                                             gCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCa       <  1:1234103/100‑1 (MQ=255)

                                                                                                 aGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACt    <  2:2136299/99‑1 (MQ=255)

                                                                                                  ggCCTGATAAGACGCGCCAGCGTCGCATCAGGCctacgcaggggtagaaccgtaggtcggataaggcgtttacgccgcatccgacacgcattgcccgatg  <  1:2581764‑M2/100‑68 (MQ=255)

                                                                                                  ggCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCa  >  2:1621024/1‑100 (MQ=255)

TTCAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCA  >  NC_000913/2430882‑2431079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.