New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2443835NA (NA)8 (0.080) 7/164 NT NA noncoding (47/80 nt) REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 2443868 NA (NA)noncoding (80/80 nt) REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 159 total aligned reads displayed.

AATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGG  >  NC_000913/2443736‑2443934
                                                                                                   |                                                                                                   
  ttgttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgc                                                                                                   >  2:113087‑M1/1‑98 (MQ=255)
   tgttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcc                                                                                                  <  1:1817993‑M1/100‑4 (MQ=255)
   tgttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcc                                                                                                  <  1:481839‑M1/100‑4 (MQ=255)
    gttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTTCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcct                                                                                                 <  1:2900411‑M1/100‑5 (MQ=255)
    gttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcct                                                                                                 >  1:2681836‑M1/1‑96 (MQ=255)
    gttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcct                                                                                                 <  1:32532‑M1/100‑5 (MQ=255)
     ttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcctg                                                                                                <  1:2170815‑M1/100‑6 (MQ=255)
     ttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcctg                                                                                                >  2:2262613‑M1/1‑95 (MQ=255)
       gAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcctgat                                                                                              >  2:860216‑M1/1‑93 (MQ=255)
       gAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcctgat                                                                                              >  2:1966016‑M1/1‑93 (MQ=255)
        aaGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATa                                                                                             <  1:1861454/100‑1 (MQ=255)
        aaGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATa                                                                                             >  2:1418340/1‑100 (MQ=255)
        aaGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATa                                                                                             <  2:1171025/100‑1 (MQ=255)
         aGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATaa                                                                                            <  1:604084/100‑1 (MQ=255)
          gggTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAg                                                                                           >  1:539294/1‑100 (MQ=255)
           ggTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGa                                                                                          <  1:1643762/100‑1 (MQ=255)
              aaaGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGAcgc                                                                                       <  2:68205/100‑1 (MQ=255)
               aaGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGAcgcg                                                                                      <  2:2251108/100‑1 (MQ=255)
                  cGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCGGATAAGACGCGATa                                                                                   <  1:326275/100‑1 (MQ=255)
                   ggTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATaa                                                                                  >  2:2760390/1‑100 (MQ=255)
                    gTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAg                                                                                 >  1:1521185/1‑100 (MQ=255)
                     ttAAGGCGGGGTAATCTGCTCTCGTAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTATGCCTGATAAGACGCGATAAg                                                                                 <  2:2915382/99‑1 (MQ=255)
                      tAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCg                                                                               <  1:867548/100‑1 (MQ=255)
                        aGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTc                                                                             <  2:1403615/100‑1 (MQ=255)
                         ggCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCg                                                                            >  2:1146594/1‑100 (MQ=255)
                         ggCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCg                                                                            >  1:2646791/1‑100 (MQ=255)
                          gCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGc                                                                           <  2:2858966/100‑1 (MQ=255)
                           cGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCA                                                                          >  2:50818‑M2/1‑100 (MQ=255)
                              ggTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcctgatgcgacgcttatcgcgtcttatca                                                                       <  1:1794094‑M1/100‑31 (MQ=255)
                               gTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAG                                                                      >  1:749388‑M2/1‑100 (MQ=255)
                                tAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcctgatgcgacgcttatcgcgtcttatcagg                                                                     <  2:2019535‑M1/100‑33 (MQ=255)
                                tAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcctgatgcgacgcttatcgcgtcttatcagg                                                                     <  2:2847223‑M1/100‑33 (MQ=255)
                                tAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGG                                                                     >  1:2979940‑M2/1‑100 (MQ=255)
                                  aTCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcctgatgcgacgcttatcgcgtcttatcaggcc                                                                   <  1:314713‑M1/100‑35 (MQ=255)
                                   tCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcctgatgcgacgcttatcgcgtcttatcaggcct                                                                  <  1:2739918‑M1/100‑36 (MQ=255)
                                    cTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAtg                                                                 >  1:635554/1‑100 (MQ=255)
                                     tGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAtgc                                                                <  2:2971942/100‑1 (MQ=255)
                                       ctctCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAtgctg                                                              >  2:2938484/1‑100 (MQ=255)
                                        tctcGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcctgatgcgacgcttatcgcgtcttatcaggcctacac                                                              <  1:50506‑M1/99‑40 (MQ=255)
                                         ctcGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATgctgct                                                            <  1:2773414/100‑1 (MQ=255)
                                          tcGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATTAGGCAtgctgcac                                                           <  1:2112905/100‑3 (MQ=255)
                                          tcGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTc                                                           >  1:1274625/1‑100 (MQ=255)
                                           cGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCTGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTcc                                                          <  1:2188979/100‑1 (MQ=255)
                                           cGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTcc                                                          <  2:421525/100‑1 (MQ=255)
                                           cGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTcc                                                          >  1:2013291/1‑100 (MQ=255)
                                           cGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTcc                                                          >  1:2157021/1‑100 (MQ=255)
                                           cGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTcc                                                          <  1:2164704/100‑1 (MQ=255)
                                           cGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTcc                                                          >  1:2745288/1‑100 (MQ=255)
                                                  tttGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCTATAAGCGTCGCATCAGGCATGCTGCTCCAGAcgcc                                                   <  2:1309337/100‑1 (MQ=255)
                                                  tttGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcgcc                                                   <  1:3026956/100‑1 (MQ=255)
                                                   ttGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcgccg                                                  <  2:2125560/100‑1 (MQ=255)
                                                    tGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcgccgc                                                 >  2:77726/1‑100 (MQ=255)
                                                    ggtcggataaggcgttcacgccgcatccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcgccgc                                                 <  2:1650823‑M1/69‑1 (MQ=255)
                                                     gtcggataaggcgttcacgccgcatccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCa                                                <  1:2445336‑M1/70‑1 (MQ=255)
                                                     gCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCa                                                <  2:231938/100‑1 (MQ=255)
                                                     gCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCa                                                <  2:344745/100‑1 (MQ=255)
                                                      tcggataaggcgttcacgccgcatccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCaa                                               <  1:1915596‑M1/71‑1 (MQ=255)
                                                      ccGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCaa                                               <  2:635553/100‑1 (MQ=255)
                                                       cGGATGCGTCGTGACCGCCTTCGCCGCCCGACGCGTGACGTGTAGGCCTCATAACACGCGAGAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCa                                                <  2:2863018/98‑1 (MQ=25)
                                                       cGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAAc                                              >  1:732763/1‑100 (MQ=255)
                                                        ggataaggcgttcacgccgcatccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACt                                             <  2:1179894‑M1/73‑1 (MQ=255)
                                                        ggataaggcgttcacgccgcatccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACt                                             <  1:2168183‑M1/73‑1 (MQ=255)
                                                         gATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACtt                                            <  1:2805362/100‑1 (MQ=255)
                                                          aTGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTa                                           <  2:1532496/100‑1 (MQ=255)
                                                             cggcgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTActg                                        >  1:2333126/1‑100 (MQ=255)
                                                             cggcgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCAACAGGCATGCTGCTCCAGACGCCGCAACCTActg                                        >  2:238462/1‑100 (MQ=255)
                                                               gcgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTActgct                                      >  2:1895951/1‑100 (MQ=255)
                                                                 gTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCtgt                                    <  1:1575700/100‑1 (MQ=255)
                                                                     aCGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACg                                >  1:1693687/1‑100 (MQ=255)
                                                                      cGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCctacacgtcacacgtaggtcggataaggcgttcacgc                               <  1:2926867‑M2/100‑38 (MQ=255)
                                                                        ccTTATCGGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCct                             >  1:1634995/1‑100 (MQ=255)
                                                                         cTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATACTGCTCCAGACGCCGCAACTTACTCCTGTGACGcc                              >  2:1354311/1‑98 (MQ=255)
                                                                          ttATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCctgc                           >  1:2921064/1‑100 (MQ=255)
                                                                           tATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCctgct                          <  1:1325724/100‑1 (MQ=255)
                                                                           tATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCctgct                          >  1:674612/1‑100 (MQ=255)
                                                                            atccgacCTATGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCctgctg                         >  2:1301947‑M1/8‑100 (MQ=255)
                                                                            atccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCctgctg                         <  2:2839436‑M1/93‑1 (MQ=255)
                                                                                gcccTACGTGTGACGTGTAGGCCGGATAAGCCGCAATAAGCGCCGCATCATGCATGCTGCGCCACACGCCGCAACTTACTGCTGTGATGTctgc                           <  2:2463323/92‑1 (MQ=255)
                                                                                gacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAAc                     >  1:1162871‑M1/4‑100 (MQ=255)
                                                                                 acCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACa                    <  2:2637578‑M1/98‑1 (MQ=255)
                                                                                  cCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAg                   <  2:1497630‑M1/99‑1 (MQ=255)
                                                                                  cCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAg                   <  1:1126711‑M1/99‑1 (MQ=255)
                                                                                         gtgACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTcc            <  1:2839465/100‑1 (MQ=255)
                                                                                         gtgACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTcc            >  1:308163/1‑100 (MQ=255)
                                                                                           gACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCca          >  2:2081428/1‑100 (MQ=255)
                                                                                            aCGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCcac         <  1:1014688/100‑1 (MQ=255)
                                                                                             cGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCcaca        <  1:1035140/100‑1 (MQ=255)
                                                                                             cGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCcaca        >  1:2957822/1‑100 (MQ=255)
                                                                                             cGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCcaca        <  2:2489071/100‑1 (MQ=255)
                                                                                             cGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCcaca        <  1:1839566/100‑1 (MQ=255)
                                                                                             cGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCcaca        >  1:683854/1‑100 (MQ=255)
                                                                                              gtgtAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACat       >  2:2361505/1‑100 (MQ=255)
                                                                                              gtgtAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACat       >  1:426938/1‑100 (MQ=255)
                                                                                               tgtAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCctacacgtcacacgtaggtcggataaggcgttcacgctgcatccggcaaacactgcgagagc      <  1:2843477‑M2/100‑63 (MQ=255)
                                                                                                gtAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACatat     >  2:2577412/1‑100 (MQ=255)
                                                                                                gtAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACatat     >  2:331966/1‑100 (MQ=255)
                                                                                                 tAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATc    >  2:1772351/1‑100 (MQ=255)
                                                                                                   ggCCTGATAAGACGCGATAAGCGTCGCATCAGGCctacacgtcacacgtaggtcggataaggcgttcacgccgcatccggcaaacactgcgagagcagat  <  1:314713‑M2/100‑67 (MQ=255)
                                                                                                   ggCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCgg  >  1:1234471/1‑100 (MQ=255)
                                                                                                   ggCCTGATAAGACGCGATAAGCATCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCgg  >  2:1804388/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
AATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGG  >  NC_000913/2443736‑2443934

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.