New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3525557NA (NA)6 (0.060) 7/164 NT NA noncoding (80/98 nt) RIP251 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP251 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 3525568 NA (NA)noncoding (91/98 nt) RIP251 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP251 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 184 total aligned reads displayed.

CTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTGCGCGCTTCATTGAAGTCAGGG  >  NC_000913/3525469‑3525667
                                                                                                   |                                                                                                   
cTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGc                                                                                                     >  1:2862707/1‑100 (MQ=255)
cTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGc                                                                                                     <  2:736210/100‑1 (MQ=255)
 ttGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCa                                                                                                    >  1:3019819‑M2/1‑99 (MQ=255)
  tGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCat                                                                                                   <  2:2895763‑M2/100‑3 (MQ=255)
    tttATGTCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAACCCCCATAAGCCTGATAAACATTGTGCatca                                                                                                 >  2:1743624‑M2/1‑96 (MQ=255)
    tttATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCatca                                                                                                 >  2:895854‑M2/1‑96 (MQ=255)
     ttATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCatcag                                                                                                <  2:693765‑M2/100‑6 (MQ=255)
     ttATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCatcag                                                                                                <  2:693710‑M2/100‑6 (MQ=255)
     ttATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCatc                                                                                                  >  2:114063‑M2/1‑95 (MQ=255)
     ttATGCCGGATACGGCGTGAACGCGTTAGCCCGCAAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCat                                                                                                   >  2:1338046‑M2/1‑95 (MQ=255)
       aTGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCatcaggc                                                                                              >  1:1064191‑M2/1‑93 (MQ=255)
       aTGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCatcaggc                                                                                              <  1:351505‑M2/100‑8 (MQ=255)
        tGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCa                                                                                             >  1:2740312/1‑100 (MQ=255)
        tGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCa                                                                                             <  2:59990/100‑1 (MQ=255)
        agCCGGATAACGCGTTCACGCCGTATCCGGCTAACAAAATCGCGAAAACACAATAAATTGCAGAAACCCCATAAGCCTGATACACATTGTGCATCAGGCa                                                                                             >  2:1935000/2‑100 (MQ=25)
         gCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCaa                                                                                            >  2:2285346/1‑100 (MQ=255)
         gCCGGATAACGCGTTCACGCCGTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCGGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCa                                                                                             >  2:1533975/1‑99 (MQ=37)
           cGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAAc                                                                                          <  2:1748496/100‑1 (MQ=255)
            ggATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAAc                                                                                          <  1:2230724/99‑1 (MQ=255)
             gATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACtt                                                                                        >  1:1491710/1‑100 (MQ=255)
                aCGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCAc                                                                                     >  2:2123925/1‑100 (MQ=255)
                aCGGCGTGAACGCGGTATCCGGCTAACAAAATCGTGAAAACTCAATTAATTGCAGAAACCCCATGAGCCTGATAAACATTGTGCATCAGGCAAACTTCAc                                                                                     <  2:2632961/100‑1 (MQ=255)
                 cGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACg                                                                                    <  2:1004039/100‑1 (MQ=255)
                  ggCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGc                                                                                   >  2:966288/1‑100 (MQ=255)
                   gCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCa                                                                                  <  1:1592450/100‑1 (MQ=255)
                   gCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCATGATAAACATTGTGCATCAGGCAAACTTCACGCa                                                                                  >  1:1387651/1‑100 (MQ=255)
                    cGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCAt                                                                                 >  2:2764019/1‑100 (MQ=255)
                      tGAACGTGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATGCACAATGTTTatcaggcttatggggtttctg                                                                                >  1:1555620‑M2/1‑78 (MQ=255)
                       gAACGCGTTATCCAGCTAACAAAATCGTGAAGACTCAATAAAGTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTa                                                                              >  1:2098302/1‑100 (MQ=255)
                         aCGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTaca                                                                            >  1:2397891/1‑100 (MQ=255)
                         aCGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTaca                                                                            >  1:1067398/1‑100 (MQ=255)
                           gcgTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATGCACAATGTTTatcaggcttatggggtttctgcaattt                                                                          >  1:1968948‑M2/1‑73 (MQ=255)
                            cgTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTc                                                                         >  1:995359/1‑100 (MQ=255)
                             gTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCg                                                                        <  2:167751/100‑1 (MQ=255)
                             gTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCg                                                                        <  2:2319290/100‑1 (MQ=255)
                               tATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGcc                                                                      >  2:1423595/1‑100 (MQ=255)
                                 tccgatctaCAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGcccc                                                                    <  2:1648054/92‑1 (MQ=255)
                                 tCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGcccc                                                                    <  1:1672169/100‑1 (MQ=255)
                                       tAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCt                                                              <  1:1568325/100‑1 (MQ=255)
                                       tAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCt                                                              >  1:2762016/1‑100 (MQ=255)
                                        aaCAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCtt                                                             <  1:122735/100‑1 (MQ=255)
                                         aCAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCttt                                                            >  1:2035139/1‑100 (MQ=255)
                                         aCAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCttt                                                            >  1:3098352/1‑100 (MQ=255)
                                          cAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTc                                                           >  2:322616/1‑100 (MQ=255)
                                           aaaaTCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCGTTTACACTCGCCCCTGCCCTTTCa                                                          <  2:213433/100‑1 (MQ=255)
                                           aaaaTCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCa                                                          <  1:488773/100‑1 (MQ=255)
                                           aaaaTCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCa                                                          <  2:2781134/100‑1 (MQ=255)
                                             aaTCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAAc                                                        <  1:78667/100‑1 (MQ=255)
                                              aTCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAAcc                                                       <  2:3024669/100‑1 (MQ=255)
                                                 gTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCAtt                                                    >  2:857574/1‑100 (MQ=255)
                                                  tGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTc                                                   <  1:239856/100‑1 (MQ=255)
                                                  tGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTc                                                   <  2:1289219/100‑1 (MQ=255)
                                                   gAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTcg                                                  <  1:290731/100‑1 (MQ=255)
                                                   gAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTcg                                                  <  1:2814321/100‑1 (MQ=255)
                                                     aaaCTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTcgcg                                                <  2:1261363/100‑1 (MQ=255)
                                                          cAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAACCTTCACGCATTGACACTCGCCCCTGCCCTTTTAACCATTCTCTCACGa                                           >  2:451230/1‑100 (MQ=255)
                                                           aaTAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAg                                          >  1:602296/1‑100 (MQ=255)
                                                            aTAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAgg                                         <  1:1076174/100‑1 (MQ=255)
                                                             tAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGa                                        <  2:2862678/100‑1 (MQ=255)
                                                                aTTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACa                                     <  1:2505764/100‑1 (MQ=255)
                                                                 ttGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAg                                    <  1:1516339/100‑1 (MQ=255)
                                                                  tGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAgc                                   <  1:2822340/100‑1 (MQ=255)
                                                                   gCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAgcg                                  <  1:2493223/100‑1 (MQ=255)
                                                                    cAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAgcgc                                 >  2:2057680/1‑100 (MQ=255)
                                                                    cAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAgcgc                                 >  2:2240070/1‑100 (MQ=255)
                                                                     aGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCa                                >  1:2354421/1‑100 (MQ=255)
                                                                      gAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCAc                               >  2:1858041/1‑100 (MQ=255)
                                                                       aaaCCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCaat                              >  1:2198694/1‑98 (MQ=255)
                                                                        aaCCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTg                             >  2:2272535/1‑100 (MQ=255)
                                                                          ccccATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGAc                           >  1:1017618/1‑100 (MQ=255)
                                                                          ccccATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGAc                           <  1:339508/100‑1 (MQ=255)
                                                                           cccATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACa                          <  2:3066012/100‑1 (MQ=255)
                                                                            ccATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACAt                         >  1:1951519/1‑100 (MQ=255)
                                                                            ccATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACAt                         >  2:2266485/1‑100 (MQ=255)
                                                                               tAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTgc                      >  2:2522907/1‑100 (MQ=255)
                                                                               tAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTgc                      <  1:969628/100‑1 (MQ=255)
                                                                                aaGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTgcg                     <  2:1359836/100‑1 (MQ=255)
                                                                                 aGCCTGATAAACATTGTGCatcaggcttatggggtttctgcaatttattgagttttcacgattttgttagccggataacgcgttcacgccgtatccggca                    <  1:1091724‑M2/100‑82 (MQ=255)
                                                                                 aGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTgcgc                    <  2:11229/100‑1 (MQ=255)
                                                                                 aGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTgcgc                    <  1:1332791/100‑1 (MQ=255)
                                                                                 aGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTgcgc                    >  2:2950265/1‑100 (MQ=255)
                                                                                  gCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTgcgcg                   >  1:1151641/1‑100 (MQ=255)
                                                                                  gCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTgcgcg                   >  1:2839174/1‑100 (MQ=255)
                                                                                    cTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTGCGCGCt                 <  2:3098323/100‑1 (MQ=255)
                                                                                    cTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTGCGCGCt                 <  1:1920666/100‑1 (MQ=255)
                                                                                     tGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTGCGCGCtt                <  1:1826964/100‑1 (MQ=255)
                                                                                      gATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTGCGCGCTTc               >  2:2182924/1‑100 (MQ=255)
                                                                                      gATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTGCGCGCTTc               <  1:2579014/100‑1 (MQ=255)
                                                                                      gATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCATGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTGCGCGCTTc               >  2:1726953/1‑100 (MQ=255)
                                                                                        tAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTGCGCGCTTCAt             >  2:415188/1‑100 (MQ=255)
                                                                                          aaCATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTGCGCGCTTCATTg           <  2:2204190/100‑1 (MQ=255)
                                                                                          aaCATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTGCGCGCTTCATTg           <  1:1226720/100‑1 (MQ=255)
                                                                                           aCATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTGCGCGCTTCATTGa          >  2:2871649/1‑100 (MQ=255)
                                                                                             aTTGTGTATCAGTGAAACTGCACGCATGTACTGTCGCCTTTGCCCTTTCAACCGTTCGCGCACGAGGAACAGCGCACTGACATTGCGCGCTTCATTGAAg        <  2:245097/100‑1 (MQ=255)
                                                                                             aTTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTGCGCGCTTCATTGAAg        <  2:979240/100‑1 (MQ=255)
                                                                                             aTTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTGCGCGCTTCATTGAAg        <  1:1288301/100‑1 (MQ=255)
                                                                                                 tgCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTGCGCGCTTCATTGAAGTCAg    <  1:1726968/100‑1 (MQ=255)
                                                                                                 tgCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTGCGCGCTTCATTGAAGTCAg    <  1:393242/100‑1 (MQ=255)
                                                                                                   cATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTGCGCGCTTCATTGAAGTCAggg  <  1:1769603/100‑1 (MQ=255)
                                                                                                   cATCAGGCAAACTTCACGCATTTACACTCGCCCCTGACCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTGCGCGCTTCATTGAAGTCAggg  <  1:2182944/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
CTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCCTTTCAACCATTCGCGCACGAGGAACAGCGCACTGACATTGCGCGCTTCATTGAAGTCAGGG  >  NC_000913/3525469‑3525667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.