New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3620220NA (NA)12 (0.120) 7/166 NT 100% coding (1029/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620255 0 (0.000)coding (1064/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

TGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCA  >  NC_000913/3620156‑3620353
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tGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCC                                                                                                    <  1:2228439‑M2/100‑1 (MQ=255)
tGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCC                                                                                                    >  1:1625028‑M2/1‑100 (MQ=255)
 ggCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATATCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCC                                                                                                    <  2:2184236‑M2/99‑1 (MQ=255)
                                                  gatgatAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggt                                                  <  2:905108‑M2/100‑51 (MQ=255)
                                                    tgatAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtca                                                <  1:235292‑M2/100‑53 (MQ=255)
                                                           tACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacacca                                         <  2:179358‑M2/100‑60 (MQ=255)
                                                            aCCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccac                                        <  1:1543880‑M2/100‑61 (MQ=255)
                                                               ggggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgc                                     <  1:1010852‑M2/100‑64 (MQ=255)
                                                               ggggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgc                                     <  1:664680‑M2/100‑64 (MQ=255)
                                                                gggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgcc                                    <  1:2728463‑M2/100‑65 (MQ=255)
                                                                gggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgcc                                    <  1:825537‑M2/100‑65 (MQ=255)
                                                                gggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgcc                                    <  2:1581223‑M2/100‑65 (MQ=255)
                                                                gggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgcc                                    <  2:2132833‑M2/100‑65 (MQ=255)
                                                                gggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCcaggtatttatcatcgtacgtaaagctgcgcacctgtttgccactacggtcatacaccaccgcc                                    <  1:239350‑M2/100‑65 (MQ=255)
                                                                 ggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctctttgccactagggtcatacaccaccgcc                                    <  2:600844‑M2/99‑65 (MQ=255)
                                                                                              ccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgc      >  1:2753919‑M2/1‑6 (MQ=255)
                                                                                               cggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgca     >  1:508775‑M2/1‑5 (MQ=255)
                                                                                               cggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgca     >  1:1313940‑M2/1‑5 (MQ=255)
                                                                                                ggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcac    <  2:2669750‑M2/100‑97 (MQ=255)
                                                                                                ctccccggtatttatcatcgtaagtgaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcac    >  1:258019‑M2/3‑4 (MQ=255)
                                                                                                  ccccggtatttatcatcgtaagtgaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcacag  <  2:258017‑M2/100‑99 (MQ=255)
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TGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCA  >  NC_000913/3620156‑3620353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.