| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3943543 | NA (NA) | 3 (0.030) | 3/156 | NT | 100% | intergenic (+33/‑161) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3943583 | 0 (0.000) | intergenic (+73/‑121) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
GGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAA > NC_000913/3943484‑3943682 | ggggTTCGAATCCCCTATGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATT < 1:147878‑M2/100‑1 (MQ=255)ggggTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATT < 2:2922766‑M2/100‑1 (MQ=255) cTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattc < 1:2636568‑M2/100‑54 (MQ=255) tGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcg < 1:926615‑M2/100‑55 (MQ=255) gCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcga < 1:1869537‑M2/100‑56 (MQ=255) tttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctg > 1:2211734‑M2/1‑11 (MQ=255) tttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctg > 1:1365039‑M2/1‑11 (MQ=255) ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg > 1:958383‑M2/1‑10 (MQ=255) ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg > 2:415455‑M2/1‑10 (MQ=255) ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg > 2:2226229‑M2/1‑10 (MQ=255) ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg > 2:2052630‑M2/1‑10 (MQ=255) tGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctggg > 1:2380871‑M2/1‑9 (MQ=255) tGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg > 1:964454‑M2/1‑9 (MQ=255) gagaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggc > 1:1489061‑M2/1‑8 (MQ=255) agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc > 2:1127702‑M2/1‑7 (MQ=255) gaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcct < 1:2245774‑M2/100‑95 (MQ=255) gaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgccccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcct < 1:550081‑M2/100‑95 (MQ=255) atatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctc > 1:3036840‑M2/1‑5 (MQ=255) atatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctc > 2:2678487‑M2/1‑5 (MQ=255) tatTaaggcaggtgactttctctcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct < 2:1331437‑M2/100‑97 (MQ=255) tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct < 1:356835‑M2/100‑97 (MQ=255) tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct > 2:2149719‑M2/1‑4 (MQ=255) tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct > 1:166706‑M2/1‑4 (MQ=255) tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct < 2:545668‑M2/100‑97 (MQ=255) atTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgagcccctgttaccgccgtgaaagggcggtgtcctgggcctcta > 2:1226310‑M2/1‑3 (MQ=255) taaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctag < 2:1019100‑M2/99‑99 (MQ=255) taaggcaggtgactttcactcacaaaccagcaagtggcggcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctaga < 2:3070381‑M2/100‑100 (MQ=255) | GGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAA > NC_000913/3943484‑3943682 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |