New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1432761	NA (NA)	8 (0.080)	6/170	NT	NA	coding (351/576 nt)	tfaR	Rac prophage; putative tail fiber assembly protein
	?	NC_000913	= 1432785	NA (NA)					coding (375/576 nt)	tfaR	Rac prophage; putative tail fiber assembly protein

GCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCT  >  NC_000913/1432713‑1432868                                                                         |                                                                                    gacGGAAGAAGAATATCAGAAGTGGAAAGGAACAGCCTGAGTGAAGGATACAGAAGCAGAAAAACTGTTCCGGTTCCGGGAGGAaaaaaaaaaaaaaa                                                            <  2:2451210/96‑1 (MQ=0)                                                         ctgtcaatcTGTTCCGAATCAGGTTGGCGCAAGCAACAAAAAACAACCTGATGCAGCTAGCCAGTGAGCATATTGTGCCGCTTCCGTATGCTGCAGAtat  >  2:2207260/9‑98 (MQ=0)                                                          ataataaCTGTTGCGGAGCAGGGAGGCGGATGACACAAAAAACGACCTGATGCAGGTGGCCAGTGTGCATATTGCGCCGCTTCAGGAtgctgc        <  2:911793/88‑1 (MQ=1)                                                                         |                                                                                    GCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCT  >  NC_000913/1432713‑1432868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.