New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1432784NA (NA)4 (0.040) 5/168 NT NA coding (374/576 nt) tfaR Rac prophage; putative tail fiber assembly protein
?NC_000913 = 1432795 NA (NA)coding (385/576 nt) tfaR Rac prophage; putative tail fiber assembly protein

GCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATTGCAACGG  >  NC_000913/1432713‑1432882
                                                                                  |                                                                                       
gacGGAAGAAGAATATCAGAAGTGGAAAGGAACAGCCTGAGTGAAGGATACAGAAGCAGAAAAACTGTTCCGGTTCCGGGAGGAaaaaaaaaaaaaaa                                                                          <  2:2451210/96‑1 (MQ=0)
                                                        ctgtcaatcTGTTCCGAATCAGGTTGGCGCAAGCAACAAAAAACAACCTGATGCAGCTAGCCAGTGAGCATATTGTGCCGCTTCCGTATGCTGCAGAtat                >  2:2207260/9‑98 (MQ=0)
                                                         ataataaCTGTTGCGGAGCAGGGAGGCGGATGACACAAAAAACGACCTGATGCAGGTGGCCAGTGTGCATATTGCGCCGCTTCAGGAtgctgc                      <  2:911793/88‑1 (MQ=1)
                                                                      cgtaTCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATTGCAACgg  >  2:1801604/4‑100 (MQ=1)
                                                                                  |                                                                                       
GCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATTGCAACGG  >  NC_000913/1432713‑1432882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.