BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2662311 =	NA (NA)	6 (0.060)	5/168	NT	NA	noncoding (3/266 nt)	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
*	?	NC_000913	2662337 =	NA (NA)	6 (0.060)	5/168	NT	NA	noncoding (29/266 nt)	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences

Only 100 of 161 total aligned reads displayed.

ATTTACTTGACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGT  >  NC_000913/2662238‑2662436

cgcatccgacagccgttgcctgatgcgacgcgtaatgcgtcttatcaggcctacagtgtacagaaccccagggcggatatggcgtgaacgccatatccgc                                                                                                     <  2:1537497‑M2/1‑1 (MQ=255)

aTTTACTTGACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGc                                                                                                     >  2:1325625/1‑100 (MQ=255)

aTTTACTTGACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGc                                                                                                     >  1:2762524/1‑100 (MQ=255)

aTTTACTTGACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTAGGATGCGGCGTGAACGCCATATCCGc                                                                                                     >  1:2967752/1‑100 (MQ=255)

 tttACTTGACTGAGTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTGATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGcc                                                                                                    <  2:2983739/100‑1 (MQ=255)

 gcatccgacagccgttgcctgatgcgacgcgtaatgcgtcttatcaggcctacagtgtacagaaccccagggcggatgcggcgtgaacgccatatccgcc                                                                                                    <  1:500896‑M2/2‑1 (MQ=255)

  catccgacagccgttgcctgatgcgacgcgtaatgcgtcttatcaggcctacagtgtacagaaccccagggCGGATGCGGCGTGAACGCCATATCCGccc                                                                                                   >  1:2641676‑M1/72‑100 (MQ=255)

     ccgacagccgttgcctgatgcgacgcgtaatgcgtcttatcaggcctacagtgtacagaaccccagggCGGATGCGGCGTGAACGCCATATCCGCCCTgg                                                                                                >  1:105001‑M1/69‑100 (MQ=255)

        gACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGt                                                                                             >  1:1538675/1‑100 (MQ=255)

          ccgATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTc                                                                                           >  1:9846/3‑100 (MQ=255)

          cTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTTTCCGCTGCGGCGTGAACGCCATATCCGCCCTCGGGtt                                                                                            >  2:264196/1‑99 (MQ=255)

          cTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTc                                                                                           >  1:665823/1‑100 (MQ=255)

          cTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTc                                                                                           <  1:2299969/100‑1 (MQ=255)

          cTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTc                                                                                           <  1:1408834/100‑1 (MQ=255)

          cTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTc                                                                                           >  1:1229736/1‑100 (MQ=255)

           tGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCt                                                                                          >  1:1537101/1‑100 (MQ=255)

            gATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTg                                                                                         >  2:1513924/1‑100 (MQ=255)

            gATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTCGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTg                                                                                         <  2:1993545/100‑1 (MQ=255)

             acttAGTCGGGTAGTTAACCTTCAGTGCCATTTTTTTATCGTCGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGt                                                                                        >  1:2106046/3‑100 (MQ=255)

             aattAGTCGGGTAGTTAACCTTCAGTGCCATTTTTTTATCGTAGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGt                                                                                        >  1:2104943/3‑100 (MQ=255)

                 aGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCTTATCCGCCCTACGGTTCTGTtcac                                                                                    >  2:1767595/1‑100 (MQ=25)

                  gTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACt                                                                                   <  1:1240898/100‑1 (MQ=255)

                  gTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACt                                                                                   <  2:212491/100‑1 (MQ=255)

                  gTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACt                                                                                   >  1:167808/1‑100 (MQ=255)

                     gggTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCTTATCCGCCCTAGGGTTCTGTTCACTGTa                                                                                >  2:2083587/1‑100 (MQ=255)

                     gggTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTa                                                                                >  2:3004867/1‑100 (MQ=255)

                     gggTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTa                                                                                <  2:2307745/100‑1 (MQ=255)

                     gggTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCCGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTa                                                                                <  2:1720208/100‑1 (MQ=255)

                      ggTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAg                                                                               >  1:2238144/1‑100 (MQ=255)

                      ggTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAg                                                                               <  1:2555156/100‑1 (MQ=255)

                       gTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTTAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAg                                                                               <  2:1517444/99‑1 (MQ=255)

                       gTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAgg                                                                              >  1:2206861/1‑100 (MQ=255)

                       gTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAgg                                                                              <  2:1158483/100‑1 (MQ=255)

                         aTTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGcc                                                                            <  1:2220179/100‑1 (MQ=255)

                          tttAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCt                                                                           >  1:1434382/1‑100 (MQ=255)

                          tttAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCt                                                                           >  2:303395/1‑100 (MQ=255)

                              aCCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATa                                                                       <  1:1326112/100‑1 (MQ=255)

                              aCCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATa                                                                       >  1:384459/1‑100 (MQ=255)

                               ccTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGa                                                                         >  1:625277/1‑97 (MQ=255)

                                   cAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACg                                                                  <  1:2947803/100‑1 (MQ=255)

                                    cgatctaTTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGc                                                                 <  1:1818095/94‑1 (MQ=255)

                                     gTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCa                                                                >  1:2202038/1‑100 (MQ=255)

                                      tGCCCTTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGTTGCGCCGTGAACTCTATATCCACCCTGGGTTTCTGTACACTGTAGGCAAGATAGGAc                                                                   <  2:1168434/96‑1 (MQ=255)

                                       gCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCAtt                                                              <  2:2264730/100‑1 (MQ=255)

                                        ccATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTa                                                             >  2:1351141/1‑100 (MQ=255)

                                         cATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTAc                                                            >  1:1289813/1‑100 (MQ=255)

                                          aTTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCTATATCAGTCCTGGGGTGCTGTTCACTGTAGGCCTGATAAGACGCATTa                                                             >  2:31416/1‑98 (MQ=21)

                                          aTTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTAcg                                                           <  1:2688670/100‑1 (MQ=255)

                                             tttttATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGt                                                        <  2:59023/100‑1 (MQ=255)

                                              ttttATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTc                                                       <  2:2675754/100‑1 (MQ=255)

                                               tttGTCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGGACACTGTAGGCCTGATAAGACGCATTACGCGTc                                                       <  1:1851905/99‑1 (MQ=255)

                                                ttATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGc                                                     <  2:1214813/100‑1 (MQ=255)

                                                       ggCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGc                                              >  2:1688641/1‑100 (MQ=255)

                                                       ggCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGc                                              >  2:2188514/1‑100 (MQ=255)

                                                        gCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCa                                             >  1:1135630/1‑100 (MQ=255)

                                                          gTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAAc                                           >  1:1421851/1‑100 (MQ=255)

                                                            ttGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACgg                                         <  1:897550/100‑1 (MQ=255)

                                                            ttGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACgg                                         <  2:1969423/100‑1 (MQ=255)

                                                                 ccTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTc                                    <  1:1282610/100‑1 (MQ=255)

                                                                 ccTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTc                                    <  2:2703206/100‑1 (MQ=255)

                                                                  cTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCg                                   >  2:967041/1‑100 (MQ=255)

                                                                  cTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCg                                   <  1:1814637/100‑1 (MQ=255)

                                                                  cTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCg                                   <  1:2262134/100‑1 (MQ=255)

                                                                  cTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTAAGCGTCGCATCAGGCAACGGCTGTCg                                   >  2:125259/1‑100 (MQ=255)

                                                                   tgttgtCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGt                                     >  2:1841692/1‑97 (MQ=255)

                                                                     ttgtCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGAt                                <  2:458662/100‑1 (MQ=255)

                                                                      tgtCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATg                               >  2:1624970/1‑100 (MQ=255)

                                                                      gggcggatatggcgttcacgccgcatccgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATg                               >  1:2641676‑M2/30‑100 (MQ=255)

                                                                       gtCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgc                              >  1:834548/1‑100 (MQ=255)

                                                                       ggcggatatggcgttcacgccgcatccgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATg                               >  2:1201109‑M2/29‑99 (MQ=255)

                                                                       ggcggatatggcgttcacgccgcatccgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACCCATTACGCGTCGCATCAGGCAACGGCTGTCCGATgc                              >  2:572644‑M2/29‑100 (MQ=255)

                                                                       ggCGGATATGGCGTTCACGCCGCATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATg                               <  2:572725‑M1/97‑1 (MQ=255)

                                                                        tCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcg                             <  2:1713810/100‑1 (MQ=255)

                                                                        gCGGATATGGCGTTCACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcg                             <  2:1537497‑M1/99‑1 (MQ=255)

                                                                         CGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcgg                            >  1:2401223‑M1/1‑100 (MQ=255)

                                                                          ggatatggcgttcacgccgcatccgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGTATgcggc                           >  1:1941366‑M2/26‑100 (MQ=255)

                                                                          GGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGTATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc                           >  1:988671‑M1/1‑100 (MQ=255)

                                                                          GGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc                           <  1:3104151‑M1/100‑1 (MQ=255)

                                                                           GATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGAACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggcg                          <  2:1658276‑M1/100‑1 (MQ=255)

                                                                               cggcgTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggcg                          >  2:770586/1‑96 (MQ=255)

                                                                               cggcgTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTg                        >  2:1947925/1‑98 (MQ=255)

                                                                                ggcgTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTGGCATCAGGCAACGGCTGTCGTATGGGGCGTGaa                      >  1:2503058/1‑99 (MQ=255)

                                                                                ggcgTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc                     <  1:1688080/100‑1 (MQ=255)

                                                                                 gcgTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg                    <  1:2597428/100‑1 (MQ=255)

                                                                                    tGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCt                 >  1:2475161/1‑100 (MQ=255)

                                                                                    tGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCt                 >  2:793098/1‑100 (MQ=255)

                                                                                       aCGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTa               <  2:1114155/99‑1 (MQ=255)

                                                                                        cGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATc             >  1:403441/1‑100 (MQ=255)

                                                                                        cGCCAGATACGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATAAGGCGTTCACGccgcatc             <  2:2865651/100‑6 (MQ=14)

                                                                                          ccATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCg           >  1:282405/1‑100 (MQ=255)

                                                                                            ttatCCGGCCTAGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGAc         <  2:2106029/99‑1 (MQ=9)

                                                                                             tatCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGAcc        >  1:1101641/1‑100 (MQ=255)

                                                                                             tatCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGAcc        <  1:1493904/100‑1 (MQ=255)

                                                                                              atccgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCt       >  2:1458042‑M2/6‑100 (MQ=255)

                                                                                              atccgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCt       >  1:1988692‑M2/6‑100 (MQ=255)

                                                                                                 cgCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACg    >  1:1004183‑M2/3‑100 (MQ=255)

                                                                                                 cgCCCTGCGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACg    <  1:125261‑M2/98‑1 (MQ=255)

                                                                                                 cGCCCTGGGGTGCTGTACACTGTAGGCCTGATAAGGCGCATTACGCGGCGCATCAGGCAACGGCTGTCGGATAAGGCGTTCACGCCGCATCCGAcagccg    <  2:570074/100‑6 (MQ=14)

                                                                                                   cccTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATTCGGCGTGAACGCCTTATCCGACCTACGGt  <  1:1776659/100‑1 (MQ=255)

                                                                                                   cccTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGt  >  1:1303388/1‑100 (MQ=40)

ATTTACTTGACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGT  >  NC_000913/2662238‑2662436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.