Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,781,1520AG21.8% 240.7 / 29.7 134intergenic (+135/‑63)lldD/trmLL‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
Reads supporting (aligned to +/- strand):  ref base A (71/33);  new base G (1/28);  total (72/62)
Fisher's exact test for biased strand distribution p-value = 8.59e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 135 total aligned reads displayed.

GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCG  >  NC_000913/3781053‑3781250
                                                                                                      |                                                                                                   
gggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGa                                                                                                     >  1:1597203/1‑100 (MQ=255)
   agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCCCTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑CAGGGCC‑GGGGTGAggg                                                                                                  >  2:1446144/1‑100 (MQ=255)
   agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAggg                                                                                                  >  2:749495/1‑100 (MQ=255)
    gagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAgggg                                                                                                 <  1:2394784/100‑1 (MQ=255)
      ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑aa                                                                                              >  2:3848947/1‑100 (MQ=255)
      ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑CGGGTGAGGGG‑aa                                                                                              >  1:710404/1‑100 (MQ=255)
        ggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑aaaa                                                                                            <  2:1135352/100‑1 (MQ=255)
         gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAg                                                                                           <  1:3549228/100‑1 (MQ=255)
          nccGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGGGGGG‑AAAAgg                                                                                          >  2:1317060/2‑100 (MQ=255)
             gTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTTTTTTTTTTTTCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCg                                                                                       >  2:2441089/1‑100 (MQ=255)
                    gcTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCt                                                                                >  2:1725023/1‑100 (MQ=255)
                     cTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑TGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTc                                                                               >  1:2854098/1‑100 (MQ=255)
                     cTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTc                                                                               <  2:3125993/100‑1 (MQ=255)
                       gtttgcccTCCCTCACACTAAAAGGCCACCGCAGTCTTTTTTTCCCCGCCGCCCCTCC‑GGGG‑‑GGGGGCC‑GGGGGGGGGGGTAAAAGGCCGCACTGCTc                                                                               <  2:1472589/91‑1 (MQ=255)
                          tgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCaa                                                                          >  1:2314547/1‑100 (MQ=255)
                           gtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAAt                                                                         >  1:1688508/1‑100 (MQ=255)
                           gtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAAt                                                                         >  1:1229999/1‑100 (MQ=255)
                            taCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCagat                                                                        >  1:3803409/1‑97 (MQ=255)
                            taCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCagat                                                                        >  1:3793712/1‑97 (MQ=255)
                              ctccctccCTCTGAACCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAAtttt                                                                      <  2:3291003/100‑1 (MQ=255)
                              cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GACGGCC‑TGGGTGAGGGG‑AAAAGGCCTCACTGCTCACCAAtttt                                                                      >  2:1470471/1‑100 (MQ=255)
                                 ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTg                                                                   >  2:1424670/1‑100 (MQ=255)
                                 ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTg                                                                   >  2:1742987/1‑100 (MQ=255)
                                  cTCCCTCTGACGCGCCCCCGCACTTTTTTGTTCTCACTCCCCCCGCG‑GGACA‑GGGGCCC‑GGGTTCGGGGA‑AAAAGGCCGCACTGCTCACCAATTTTc                                                                     <  2:2743600/97‑1 (MQ=255)
                                   tCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCt                                                                 >  2:2600924/1‑100 (MQ=255)
                                      ctctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCACTTTTCTGCTATc                                                              >  2:1090297/1‑100 (MQ=255)
                                      ctctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATc                                                              >  1:450289/1‑100 (MQ=255)
                                         tGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg                                                           >  1:2155608/1‑100 (MQ=255)
                                          gAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc                                                          >  2:2696268/1‑100 (MQ=255)
                                           aaacgcacccGCGCTTTTTTTTTCCCCCGCCCCCCCCC‑GGGGA‑GAGGCCC‑GGGGTGTGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATcc                                                             <  2:851091/88‑1 (MQ=255)
                                           aaaCGACTCCGCCCTTTTTTTTTCTCCCCCGCCCCCCC‑GGGGA‑GGGAGCA‑GGGGTGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCt                                                            <  2:365232/97‑1 (MQ=255)
                                           aaaCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTgac                                                         >  2:2354162/1‑98 (MQ=255)
                                            aaCGACACCGCACTCTTTTTTTTTTTTTTGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc                                                        >  2:3567086/1‑100 (MQ=255)
                                            aaCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc                                                        >  2:3159635/1‑100 (MQ=255)
                                                 ccccGCACTCTTTTTTCCTCCCCCGCCCCCCC‑GGGGA‑GGGGGCG‑GGGGTGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccccc                                                      <  2:1688504/95‑1 (MQ=255)
                                                 cacCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTACTCACCAATTTTCTGCTATCCTGccccc                                                      >  2:257715/1‑97 (MQ=255)
                                                   ccGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                                  >  1:1663935/1‑99 (MQ=255)
                                                   ccGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACt                                                 >  1:3238737/1‑100 (MQ=255)
                                                     gCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa                                               >  1:3094882/1‑100 (MQ=255)
                                                        ctctTTTTTTCTCCCTCGCCCCTCC‑GGGGC‑GAGGGCC‑GGGGTGACTGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                            >  2:806618/1‑100 (MQ=255)
                                                        ctctTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                            >  1:696707/1‑100 (MQ=255)
                                                          ttttttttCCCCCCCCCCCCCCCGGGGGA‑GAGGGCC‑GGGGTGGGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgggg                                           <  1:2155559/99‑1 (MQ=255)
                                                          ctTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg                                          >  1:3422890/1‑100 (MQ=255)
                                                          ctTTTTTTCTCCCTCGCCCCCCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCCGCTATCCTGCCCCCGCACTAAggggg                                          >  1:3369500/1‑100 (MQ=255)
                                                          ctTTTTTCCTCCCCCCCCCCCCG‑GGGGA‑G‑GGGGC‑GGGGTGGGGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                                             <  1:2477521/97‑1 (MQ=255)
                                                           tttttttC‑CCCCCCCCCCCCC‑GGGGG‑GGGGGCCGGGGGGGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgggg                                           <  2:137888/98‑1 (MQ=255)
                                                           ttttttcCCCCCCCCCCCCTCG‑GGGGG‑GGGGCCG‑GGGGGGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                            <  1:2763967/97‑1 (MQ=255)
                                                            ttttttCACCCTCCCCCCGCG‑GGGGA‑GAGGGCG‑GGGGGGAGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCa                                        <  2:3810236/100‑1 (MQ=255)
                                                            tttttcCCCCCCCCCCCCCCG‑GGGGA‑CCGGCCT‑GGCGTGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg                                          <  1:483315/98‑1 (MQ=255)
                                                             tttttCTCCCTCGCCCC‑CC‑GGGGAGGAGGTCG‑GGGGGGAGGTG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAg                                       <  2:2984340/100‑1 (MQ=255)
                                                             ttttcCCCCCTCGCCCCCCG‑GGGGA‑GGGGGCC‑GGGGTGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAg                                       <  2:1490707/100‑1 (MQ=255)
                                                               tttCCCCCCCGCCCCTCG‑GGGGG‑GGGGGCC‑GGGGTGGGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTa                                     <  2:696706/100‑1 (MQ=255)
                                                                  ctcCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAgatcgg                                  >  2:166103/1‑95 (MQ=255)
                                                                   tcCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCt                                 >  1:105081/1‑100 (MQ=255)
                                                                   tcCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCt                                 >  1:1988403/1‑100 (MQ=255)
                                                                   tcCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCt                                 >  1:2862190/1‑100 (MQ=255)
                                                                   tcCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTATGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCt                                 >  1:3685408/1‑100 (MQ=255)
                                                                    ccccCGCCCCCCC‑GGGGG‑GGGGGCG‑GGGGTGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCt                                 <  2:2203462/99‑1 (MQ=255)
                                                                    cccTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                                >  2:768007/1‑100 (MQ=255)
                                                                    cccTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                                >  1:971201/1‑100 (MQ=255)
                                                                    cccTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                                >  2:2850545/1‑100 (MQ=255)
                                                                    cccTCGCCCCGCG‑GCGAA‑TGGCGCC‑GGGGGGATCGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt                                    <  2:3391298/96‑1 (MQ=255)
                                                                     ccTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTACCCCCGCACTAAGGGGGCAGTATGCTaa                               >  1:2775076/1‑100 (MQ=255)
                                                                       gatctccTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAAc                             <  2:2218621/95‑1 (MQ=255)
                                                                       cccccccTCG‑GGGGG‑GGGGGCG‑GGGGGGGGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAAc                             <  1:93217/97‑1 (MQ=255)
                                                                        cGCCCCCCG‑GGGGG‑GGGGGCG‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAAc                             <  1:1090300/99‑1 (MQ=255)
                                                                         gCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACAt                           >  1:2718220/1‑100 (MQ=255)
                                                                         gCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACAt                           >  2:1077168/1‑100 (MQ=255)
                                                                         gCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACAt                           >  2:1203154/1‑100 (MQ=255)
                                                                          ccccccC‑GGGGG‑GGGGGCG‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACa                            <  2:1000305/98‑1 (MQ=255)
                                                                          ccccTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATc                          >  2:728032/1‑100 (MQ=255)
                                                                           nccTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCg                         >  1:3182326/2‑100 (MQ=255)
                                                                           cccTCG‑GGGGG‑GGGGGGC‑GGGGGGGGGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACAt                           <  1:1424673/99‑1 (MQ=255)
                                                                            ccgccgggggg‑gggggCG‑GGGGGGGGGGT‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaaa                              <  2:2291759/89‑1 (MQ=255)
                                                                            ccTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt                        >  2:1926853/1‑100 (MQ=255)
                                                                             ctct‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTa                       >  2:1929159/1‑100 (MQ=255)
                                                                             ccccgggggA‑GGGGGCG‑GGGGGGGGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt                        <  1:2975872/95‑1 (MQ=255)
                                                                             cTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTa                       >  2:3705430/1‑100 (MQ=255)
                                                                              tCC‑GGGGA‑GAGGGCC‑GGGGTGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTan                      <  1:1317063/100‑2 (MQ=255)
                                                                                cgggggg‑gggggCG‑GGGGGGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATc                          <  2:2090868/93‑1 (MQ=255)
                                                                                   gggA‑GGGGGCG‑GGGGGGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa                  <  2:1229997/100‑1 (MQ=255)
                                                                                    ggA‑GAGGGCG‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACttttc                 <  1:2600937/100‑3 (MQ=255)
                                                                                     ggggggggCG‑GGGGGGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc                 <  1:1081258/95‑1 (MQ=255)
                                                                                      a‑gagGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGa               >  1:713001/1‑100 (MQ=255)
                                                                                        gagGGCC‑GGGGGGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGa               <  2:3352561/99‑1 (MQ=255)
                                                                                          gggCG‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc            <  1:3690608/100‑1 (MQ=255)
                                                                                          gggCG‑GGGGGGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGaa              <  1:238218/98‑1 (MQ=255)
                                                                                          gggCG‑GGGGGGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACg                <  2:3238721/96‑1 (MQ=255)
                                                                                          gggCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc                 <  2:2862175/95‑1 (MQ=255)
                                                                                          gggCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc            >  2:3808965/1‑100 (MQ=255)
                                                                                          gggCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc            >  1:2234870/1‑100 (MQ=255)
                                                                                          gggCC‑GGGGGGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc            <  2:2362168/100‑1 (MQ=255)
                                                                                          gggCC‑GGGGGGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTCCTTTACGCAc             >  2:909001/1‑99 (MQ=255)
                                                                                          gggCC‑GGGGGAAGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGa               <  2:2998133/97‑1 (MQ=255)
                                                                                             cc‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGa         >  1:2271170/1‑100 (MQ=255)
                                                                                             cc‑GGGGGGAGGGG‑CAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAg          <  2:710403/99‑1 (MQ=255)
                                                                                                ggggTGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGa         <  2:1719718/98‑1 (MQ=255)
                                                                                                ggggTGAGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGaaa       <  1:3364470/100‑1 (MQ=255)
                                                                                                    tGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTcc   >  1:2385198/1‑100 (MQ=255)
                                                                                                     gAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCg  <  1:3517338/100‑1 (MQ=255)
                                                                                                      |                                                                                                   
GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCC‑GGGGA‑GAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCG  >  NC_000913/3781053‑3781250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑