New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 111592NA (NA)11 (0.090) 8/164 NT NA noncoding (163/200 nt) RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site
?NC_000913 = 111625 NA (NA)noncoding (196/200 nt) RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site

GCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/111495‑111592
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTTATCCGACCTACAAAAACAAATTTATCAATGAGTTAGA  <  NC_000913/111625‑111520
                                                                                                                                                                                                            
GCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGC                                                                                                          >  2:2976516/1‑100
 CGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCC                                                                                                         <  2:940845/100‑1
  GTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCT                                                                                                        >  1:3689908/1‑100
  GTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCC                                                                                                         <  1:179543/99‑1
   TCTTTTCAGGCCTAAAGGGATTTCTAACACATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGC                                                                                                          <  1:3322787/97‑1
   TCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTG                                                                                                       >  2:3119665/1‑100
     TTATGAGGCTTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCT                                                                                                        <  1:1800462/97‑1
     TTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGAT                                                                                                     <  2:2195814/100‑1
                               TCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATAAGACGCGGACAGCGTCGCATCAGtc                                                                           <  2:2502122/100‑3
                               TCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATAAGACGCGGACAGCGTCGCATCAGGC                                                                           <  1:3016821/100‑1
                               TCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATAAGACGCGGACAGCGTCGCATCAGG                                                                            <  1:1434699/99‑1
                                CATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATAAGACGCGGACAGCGTCGCATCAGGCA                                                                          <  1:1309147/100‑1
                                CATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATAAGACGCGGACAGCGTCGCATCAGGCA                                                                          <  2:2631023/100‑1
                                 ATTGATAAATTTGTTTTTTTAGTTCCGAAAAGGAGTTCACGCCGCATCCGACATTTGCACAAGATGCCTCATACGACGCGGACAGCGTCGCATCAGGCAT                                                                         <  1:1285460/100‑1
                                   TGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCT                                                                       <  2:3434214/100‑1
                                   TGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCT                                                                       <  1:1238530/100‑1
                                       AAATTTGTTTTTGTAGGTCGGATAAGGCGTCCACGCCGCATCCGACATTTGCACAAGATGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTG                                                                   <  2:1660736/100‑1
                                        AATTTGTTTTTGTAGGTCAGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGC                                                                  <  2:2820890/100‑1
                                               TTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCAC‑GTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCG                                                          <  2:3303220/100‑1
                                                                                                  GCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTTATCCGACCTACAAAAACAAATTTATCAATG         >  1:3499343/1‑99
                                                                                                  GCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTTATCCGACCTACAAAAACAAATTTATCAAT          <  1:163095/98‑1
                                                                                                    CTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTTATCTGACCTACAAAAACAAATTTATCAATGA        >  1:2771369/1‑98
                                                                                                     TGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTTATCCGACCTACAAAAACAAATTTATCAATGAGTT     <  2:1423691/100‑1
                                                                                                      GATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTTATCCGACCTACAAAAACAAATTTATCAATGAGTTA    >  2:2877935/1‑100
                                                                                                       ATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTTATCCGACCTACAAAAACAAATTTATCAATGAGTTAG   >  1:1764801/1‑100
                                                                                                        TAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTTATCCGACCTACAAAAACAAATGTATCACTGAGTTAGA  >  1:897464/1‑100
                                                                                                                                                                                                            
GCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/111495‑111592
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTTATCCGACCTACAAAAACAAATTTATCAATGAGTTAGA  <  NC_000913/111625‑111520

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.