| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4229380 = | NA (NA) | 9 (0.070) | 4/164 | NT | NA | noncoding (5/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4229413 = | NA (NA) | noncoding (38/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GCGGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4229485‑4229380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAG > NC_000913/4229413‑4229511 GCGGTTCCGCTGGAAGCTGGTCACCGTTTTTATGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTA < 2:3156424/100‑1GCGGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTA < 1:205368/100‑1 CGGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTAT < 2:154538/100‑1 GGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCTTCTTATC < 2:1938422/100‑1 GGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATC < 2:2676736/100‑1 GGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATC < 1:913964/100‑1 GTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCA < 1:2725508/100‑1 GTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCA > 1:3615286/1‑100 TTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGCTGCGACGCTTGACGCGTCTTATCAG > 1:565556/1‑100 TTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAG < 1:3673498/100‑1 TCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGG < 1:3000518/100‑1 CCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGC > 1:1100764/1‑100 TTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCT > 1:3403184/1‑100 GTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCTCTTAAAAACGGTGACCAGCTTCCAGC > 1:2792901/1‑100 GTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGC > 1:2080729/1‑100 GTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGC > 2:1666280/1‑100 GTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGC > 1:2815941/1‑100 GTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACAATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGC > 1:1985390/1‑100 GCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGG > 1:2175417/1‑100 GCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGG > 2:908663/1‑100 CTGATGCGACGCTTGACGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAA > 1:3633334/1‑100 ATCAGTAACTATGAAAAAGATGCCGGATCATTCATCCTGCAATTCACTTAAATACGGTGACCAGGTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAA < 1:1006320/98‑1 ATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACA < 2:3000540/100‑1 CAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGAGGAACCGCTTCTTCACCAGCCTTAAA < 1:3069386/96‑1 GGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATA > 1:1936379/1‑100 GCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGTGGAACCGCTTCTTCACCAGCCTTAAACACATAA > 1:2866492/1‑100 CACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAG > 1:659511/1‑100 CACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAG > 2:2699948/1‑100 CACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAG > 2:2917736/1‑100 GCGGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4229485‑4229380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAG > NC_000913/4229413‑4229511 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |