| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4326250 | NA (NA) | 20 (0.160) | 8/164 | NT | NA | noncoding (449/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 4326380 | NA (NA) | noncoding (579/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
CCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑Tgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4326152‑4326250‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGCTCGCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGA < NC_000913/4326380‑4326275 CCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TG > 1:3535916/1‑100CCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TG < 1:3351710/100‑1 CGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGC < 1:3552138/100‑1 CGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGC > 1:1847324/1‑100 CGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGC < 1:456375/100‑1 CGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGCGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGC < 1:2236359/100‑1 GGATGGGGCGTAAACGCCGTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGC < 1:399775/99‑1 GGATGCGGCGTAACCGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGCC < 1:1202720/100‑1 GGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGCC > 1:3315818/1‑100 GGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGAGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGCC < 1:918633/100‑1 GATGCGGCGTATACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTA‑GGCACCGT‑TGCCG < 2:2542487/100‑1 GATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTGGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGCCG < 1:3243087/100‑1 GATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGCCG < 2:1643777/100‑1 GATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGCCG < 2:3535943/100‑1 GATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGCCG < 2:267159/100‑1 GATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGCAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGCCG < 1:3654241/100‑1 ATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGCCGG > 2:2711817/1‑100 ATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGCCG < 2:1304625/99‑1 TGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGCCGGA < 1:3271264/100‑1 CGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGGAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGCCGG < 1:1547062/97‑1 GGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGCCGG < 1:2452981/96‑1 CCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGCCGGATAAGGCGTTTACGCCGCAT > 1:1340096/1‑100 CTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCT‑GGCACCGT‑TGCCGGATAAGGCGCTCGCGCCGCATCCGGC < 1:3188065/100‑1 CTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCT‑GGCACCGT‑TGCCGGATAAGGCGCTCGCGCCGCATCCGGC < 1:1604999/100‑1 CTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGCCGGATAAGGCGTTTACGCCGCATCCGGC < 2:735524/100‑1 CTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑TCTGGCACCGT‑TGCCGGATAAGGCGCTCGCGCCGCATCCGGC < 1:2711801/100‑1 CTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑TCTGGCACCGT‑TGCCGGATAAGGCGCTCGCGCCGCATCCGGC < 2:3253678/100‑1 CTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑TCTGGCACCGT‑TGCCGGATAAGGCGCTCGCGCCGCATCCGGC < 2:1069280/100‑1 CTACGGAGGGTGCGGGAATTTGTAGGCCTGAGAAGACGCGCAAGCGTCGCATCAGGCATCT‑GGCACCGT‑TGCCGGATAAGGCGCTCGCGCCGCATCCGGC < 1:2128468/100‑1 ACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGCCGGATAAGGCGTTTACGCCGCATCCGGCAA < 2:1340102/100‑1 CGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGTAGTC‑GGCACCGT‑TGCCGGATAAGGCGTTTACGCCGCATCCGGCAAC < 2:1922727/100‑1 CGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑TCTGGCACCGT‑TGCCGGATAAGGCGCTCGCGCCGCATCCGGCAAC < 1:3266156/100‑1 CGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑TCTGGCACCGT‑TGCCGGATAAGGCGCTCGCGCCGCATCCGGCAAC < 2:3046759/100‑1 CGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑TCTGGCACCGT‑TGCCGGATAAGGCGCTCGCGCCGCATCCGGCAAC < 2:3686443/100‑1 GGAGGGTGCGGGAATGGGGAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGCCGGATAAGGCGTTTACGCCGCATCCGG < 1:1674141/95‑1 gcGGGTGCGGGAATTTGCAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCT‑GGCACCGT‑TGCCGGATAAGGCGCTCGCGCCGCATCCGGCAACGG < 1:3641910/98‑1 GGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCT‑GGCACCGT‑TGCCGGATAAGGCGCTCGCGCCGCATCCGGCAACGGTG < 1:462490/100‑1 GTGCGGGAAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGC < 2:3029639/100‑1 TTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑TGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCgactgcctg < 1:1192876/100‑10 GGCACCGT‑TGCCGGATGCGGCGCGAGCGCCTTATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTGTCAGGCCTACAAATTCCC > 1:1354828/1‑96 GCACCGT‑TGCCGGATGCGGCGCGAGCGCCTTATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACC > 2:42597/1‑100 gtaagacaGATAAGGCGCTCGCGCCGCATTCGGCAACGGTGCCAGATCCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCT < 1:585127/90‑1 GCCGGATGCGGCGCGAGCGCCTTATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAG > 2:3156100/1‑100 GCCGGATAAGGCGCTCGCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAG > 2:964650/1‑100 GCCGGATAAGGCGCTCGCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAG > 2:286964/1‑100 GCCGGATAAGGCGCTCGCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAG > 2:1794202/1‑100 GCCGGATAAGGCGCTCGCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAG > 2:1974287/1‑100 GCCGGATAAGGCGCTCACGCCGCATCCGGCAACGGTGCCACCTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAG < 1:3048610/100‑1 CCGGATAAGGCGCTCGCGCCGCATCCGGCAACGGTGCCGGCTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCC < 1:2935184/92‑1 CCGGATAAGGCGCTCGCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGG < 2:848876/100‑1 CCGGATAAGGCGCTCGCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGG > 2:1070820/1‑100 CCGGATAAGGCGCTCGCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCCACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTA < 1:2909899/98‑1 CCGGATAAGGCCCTGTCGCCGCATCCGGCAACGGTTCCAGCTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGT < 1:1060048/97‑1 CGGATAAGGCGCTCGCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGC > 2:1461118/1‑100 GGATAAGGCGCTTGCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCATCCGTAGGCC < 1:1461112/100‑1 GGATAAGGCGCTCTCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGC < 1:918740/99‑1 GGATAAGGCGCTCGCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCC > 2:2935205/1‑100 GGATAAGGCGCTCGCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCC > 1:12360/1‑100 ATAAGGCGCTCGCGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGG < 2:263460/100‑1 ATAAGGCGCTCGCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCTCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGG < 2:1748621/100‑1 ATAAGGCGCTCGCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGG < 2:1222144/100‑1 ATAAGGCGCTCGCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGG < 1:2755697/100‑1 TAAGGCGCTCGCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGA > 1:3423580/1‑100 TAAGGCGCTCGCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGA > 2:1530502/1‑100 TAAGGCGCTCCCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCTTCTTATCAGGCTTACAAATTCCCGCACCCTCCGTAGGCCGG < 1:3576639/99‑1 CCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTC‑GGCACCGT‑Tgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4326152‑4326250‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGCTCGCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGA < NC_000913/4326380‑4326275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |