New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4634391 =114 (0.870)13 (0.110) 9/164 NT 10.2% coding (595/648 nt) ytjC phosphatase
?NC_000913 4634423 = 123 (1.010)coding (627/648 nt) ytjC phosphatase
Rejected: Frequency below cutoff threshold.

CGGGAGATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTCCCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4634496‑4634391
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccctgcATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAG  >  NC_000913/4634423‑4634519
                                                                                                                                                                                                           
CGGGCGATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGCCCAGATGCGAGATGTC                                                                                                         >  1:640102/1‑100
 GGGAGATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTCC                                                                                                        >  1:2184588/1‑100
 GGGAGATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTCC                                                                                                        >  2:3493638/1‑100
 GGGAGATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGAGGCGTCCAGATGCGAGATGTCC                                                                                                        >  2:2456087/1‑100
  GGAGATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTCCC                                                                                                       <  2:2190892/100‑1
   GAGATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTCCCC                                                                                                      <  1:708982/100‑1
   GAGATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTCCCC                                                                                                      <  1:3540902/100‑1
     GATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTCCCCTG                                                                                                    >  1:2001778/1‑100
     GATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTCCCCTG                                                                                                    >  1:3403735/1‑100
     GATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGAGCGTCCAGATGCGAGATGTCCCCT                                                                                                     >  1:874038/1‑99
      ATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTCCCCTGC                                                                                                   <  2:2459580/100‑1
      ATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTCCCCTGC                                                                                                   >  2:1916476/1‑100
                                                              AGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGAT                                           >  1:559694/1‑100
                                                                   ATCTAATGCAGGGGCGTCCAGATGCGAGATGTCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATT                                      >  2:3365142/1‑100
                                                                     CTAATGCAGGGGCGTCCAGATGCGAGATGTCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGG                                    >  2:1428735/1‑100
                                                                      TAATGCAGGGGCGTCCAGATGCGAGATGTCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGG                                   >  1:3015162/1‑100
                                                                      TAATGCAGGGGCGTCCAGATGCGAGATGTCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGG                                   >  2:1319182/1‑100
                                                                      TAATGCAGGGGCGTCCAGATGCGAGATGTCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATGAATTGGG                                   >  1:51254/1‑100
                                                                       AATGCAGGGGCGTCCAGATGCGAGATGTCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGC                                  >  2:754651/1‑100
                                                                        ATGCAGGGGCGTCCAGATGCGAGATGTCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCG                                 >  2:3105312/1‑100
                                                                        ATGCAGGGGCGTCCAGATGCGAGATGTCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCG                                 >  1:2115575/1‑100
                                                                         TGCAGGGGCGTCCAGATGCGAGATGTCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGA                                >  1:1691507/1‑100
                                                                           CAGGGGCGTCCAGATGCGAGATGTCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATC                              >  1:2335906/1‑100
                                                                           CAGGGGCGTCCAGATGCGAGATGTCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAAGCAGCAGTTCACAGCGTAGATTAATT                                      >  1:1468835/1‑92
                                                                             GGGGCGTCCAGATGCGAGATGTCCCCTGCCATAGATGAGCTGCAGCGTTAACGGCGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCT                             >  2:1070960/1‑99
                                                                                                  aCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCG       <  2:104779/99‑1
                                                                                                   CCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGG      <  2:2430260/100‑1
                                                                                                   CCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGG      >  2:2846084/1‑100
                                                                                                   CCCCTGCATTAGATGAGCTGCAGCGTTAAAGACGCACCGGAATCAGCAGTTCACAGCGTAGATTAATAGGACGAACTCCCCCTTTGGCATCTTCTGCCG       >  1:349996/1‑99
                                                                                                    CCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGG     <  1:2810791/100‑1
                                                                                                    CCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGG     <  2:608432/100‑1
                                                                                                    CCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGG     <  2:744016/100‑1
                                                                                                    CCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCCTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGG     >  1:2361633/1‑100
                                                                                                     CCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGT    <  2:1819786/100‑1
                                                                                                     CCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGG     >  1:1359338/1‑99
                                                                                                     CCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGG     >  2:752076/1‑99
                                                                                                      CTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGG      <  1:3349681/97‑1
                                                                                                       TGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAG  <  2:199001/100‑1
                                                                                                       TGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAG  <  2:2597435/100‑1
                                                                                                       TGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAG  >  2:3664562/1‑100
                                                                                                       TGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAG  <  1:1363025/100‑1
                                                                                                                                                                                                           
CGGGAGATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTCCCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4634496‑4634391
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccctgcATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAG  >  NC_000913/4634423‑4634519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.