New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1966326 =	NA (NA)	5 (0.040)	4/172	NT	NA	noncoding (5/63 nt)	REP140 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP140 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	1966348 =	NA (NA)					noncoding (27/63 nt)	REP140 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP140 (repetitive extragenic palindromic) element; contains 2 REP sequences

GTGGACGATTTGTTGGATAGTCTTGGATTTTGATTTGTATTGCCTGATGTGGCGTGACCACGTCATATCAGGCGGTCTGATAAGGCGATGACGCCGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1966425‑1966326 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcAGACCGCCTGATATGACGTGGTCACGCCACATCAGGCAATACAAATCAAAATCCAAGACTATCCAACAAATCGTCCACCTGATCCTGACTGGCTACCAC  >  NC_000913/1966348‑1966446                                                                                                                                                                                                         GTGGACGATTTGTTGGATAGTCTTGGATTTTGATTTGTATTGCCTGATGTGGCGTGACCACGTCATATCAGGCGGTCTGATAAGGCGATGACGCCGCATC                                                                                                     <  2:3318294/100‑1                                                                   ATCAGGCGGTCTGATAAGGCGATGACGCCGCATCAGACCGCCTGATATGACGTGGTCACGCCACATCAGGCAATACAAATCAAAATCCAAGACTATCCAA                                   >  1:370325/1‑100                                                                     CAGGCGGTCTGATAAGGCGATGACGCCGCATCAGACCGCCTGATATGACGTGGTCACGCCACATCAGGCAATACAAATCAAAATCCAAGACTATCCAACA                                 >  2:1459532/1‑100                                                                         CGGTCTGATAAGGCGATGACGCCGCATCCGACCGCCTGATATGACGTGGTCACGCCACATCAGGCAATACAAATCAAAATCCAAGACTATCCAACAAATC                             >  2:1145532/1‑100                                                                         CGGTCTGATAAGGCGATGACGCCGCATCAGACCGCCTGATATGACGTGGTCACGCCACATCAGGCAATACAAATCAAAATCCAAGACTATCCAACAAATC                             >  1:1497415/1‑100                                                                           GTCTGATAAGGCGATGACGCCGCATCAGACCGCCTGATATGACGTGGTCACGCCACATCAGGCAATACAAATCAAAATCCAAGACTATCCAACAAATCGT                           >  1:268778/1‑100                                                                                                  ATCAGACCGCCTGATATGACGTGGTCACGCCACATCAGGCAATACAAATCAAAATCCAAGACTATCCAACAATTCGTCCACCTGATCCTGACTGGCTACC    <  1:1323608/100‑1                                                                                                  ATCAGACCGCCTGATATGACGTGGTCACGCCACATCAGGCAATACAAATCAAAATCCAAGACTATCCAACAAATCGTCCACCTGATCCTGACTGGCTACC    >  1:1442897/1‑100                                                                                                  ATCAGACCGCCTGATATGACGTGGTCACGCCACATCAGGCAATACAAATCAAAATCCAAGACTATCCAACAAATCGTCCACCTGATCCTGACTGGCTACC    <  1:1459526/100‑1                                                                                                  ATCAGACCGCCTGATATGACGTGGTCACGCCACATCAGGCAATACAAATCAAAATCCAAGACTATCCAACAAATCGTCCACCTGATCCTGACTGGCTACC    <  2:1096714/100‑1                                                                                                  ATCAGACCGCCTGATATGACGTGGTCACGCCACATCAGGCAATACAAATCAAAATCCAAGACTATCCAACAAATCGTCCACCTGATCCTGACTGGCTACC    <  2:370326/100‑1                                                                                                    CAGACCGCCTGATATGACGTGGTCACGCCACATCAGGCAATACAAATCAAAATCCAAGACTATCCAACAAATCGTCCACCTGATCCTGACTGGCTACCAC  >  1:1969194/1‑100                                                                                                    CAGACCGCCTGATATGACGTGGTCACGCCACATCAGGCAATACAAATCAAAATCCAAGACTATCCAACAAATCGTCCACCTGATCCTGACTGGCTACCAC  <  2:2132279/100‑1                                                                                                    CAGACCGCCTGATATGACGTGGTCACGCCACATCAGGCAATACAAATCAAAATCCAAGACTATCCAACAAATCGTCCACCTGATCCTGACTGGCTACCAC  <  2:857531/100‑1                                                                                                                                                                                                         GTGGACGATTTGTTGGATAGTCTTGGATTTTGATTTGTATTGCCTGATGTGGCGTGACCACGTCATATCAGGCGGTCTGATAAGGCGATGACGCCGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1966425‑1966326 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcAGACCGCCTGATATGACGTGGTCACGCCACATCAGGCAATACAAATCAAAATCCAAGACTATCCAACAAATCGTCCACCTGATCCTGACTGGCTACCAC  >  NC_000913/1966348‑1966446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.