New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2568169 =	NA (NA)	7 (0.060)	5/164	NT	NA	noncoding (31/183 nt)	REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913	3231252 =	NA (NA)					noncoding (1/283 nt)	REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences

GCGGATAAGGCGTTCACGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGCCGCGTCTTATCCAGCCTACGGGATTGCACATGTAGggcggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2568267‑2568169 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGT  >  NC_000913/3231252‑3231289                                                                                                                                           GCGGATAAGGCGTTCACGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGCCGCTTGCCGCGTCTTATCCAGCCTACGGGATTGCACATGTAGG                                       >  1:236830/1‑100  CGGCTAAGGCCTGCACGCCGCATCCGCCGGTGGCGCGCTGCAATTGCCGGATGCGACGCTTGCCGCGTCTTATCCAGCCTACGGGATTGCACATGTAGGG                                      <  1:1654066/100‑1   GGATAAGGCGTTCACGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGCCGCGTCTTATCCAGCCTACGGGATTGCACATGTAGGGC                                     >  1:2473325/1‑100   GGATAAGGCGTTCACGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGCCGCGTCTTATCCAGCCTACGGGATTGCACATGTAGGGC                                     >  2:3107018/1‑100    GATAAGGCGTTCACGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGCCGCGTCTTATCCAGCCTACGGGATTGCACATGTAGGGCG                                    >  1:2400100/1‑100    GATAAGGCGTTCACGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGCCGCGTCTTATCCAGCCTACGGGATTGCACATGTAGGGCG                                    >  2:3256736/1‑100     ATAAGGCGTTCACGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGCCGCGTCTTATCCAGCCTACGGGATTGCACATGTAGGGCGG                                   <  2:788686/100‑1       gcggggtcCACGCCGCATCGGCCGCTGGCGCGGCGCAATTGCCGGATGCGACGCTTGCCGCGTCTTATCCAGCCTACGGGATTGCACATGTAGGGCG                                    <  2:2014821/89‑1       AAGGCGTTCACGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGCCGCGTCTTATCCAGCCTACGGGATTGCACATGTAGGGCGGAT                                 >  2:1696537/1‑100        AGGCGTTCACGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGCCGCGTCTTATCCAGCCTACGGGATTGCACATGTAGGGCGGAT                                 <  1:2133966/99‑1                          CGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGCCGCGTCTTATCCAGCCTACGGGATTGCACTTGTAGGGCGGATGCGGCTTAAACGCCTTATC              <  2:2493609/100‑1                           GCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGCCGCGTCTTATCCAGCCTACGGGATTGCACATGTAGGGCGGATGCGGCGTAAACGCCTTATCC             <  1:1260315/100‑1                            CCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGCCGCGTCTTATCCAGCCTACGGGATTGCACATGTAGGGCGGATGCGGCGTAAACGCCTTATCCG            <  1:936690/100‑1                             CAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGCCGCGTCTTATCCAGCCTACGGGATTGTACATGTAGGGCGGATGCGGCGTAAACGCCTTATCCGC           <  1:1977323/100‑1                              AGTGGCGCGGTGCAATTGCCGGCTTCGACTCTTGCCGCGTCTTATCCAGCCTACGGGATTGCACATGTAGGGCGGATGCGGTGTAAACGCCTTATCCG            <  1:1119604/98‑1                              AGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGCCGCGTCTTATCCAGCCTACGGGATTGCACATGTAGGGCGGATGCGGCGTAAACGCCTTATCCGCC          <  2:952317/100‑1                                      gcaataaaTGCCGGATGCGACGCTTGCCGCATCTTATCCAGCCTACGGGATTGCACATGTAGGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGT  <  2:1702078/92‑1                                                                                                                                           GCGGATAAGGCGTTCACGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGCCGCGTCTTATCCAGCCTACGGGATTGCACATGTAGggcggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2568267‑2568169 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGT  >  NC_000913/3231252‑3231289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.