New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2900530131 (0.990)24 (0.210) 9/156 NT 16.9% intergenic (‑257/‑62) ygcW/yqcE putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein
?NC_000913 = 2900548 121 (1.050)intergenic (‑275/‑44) ygcW/yqcE putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein

ATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2900421‑2900530
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagaaaagtaaGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCACGCTTCT  <  NC_000913/2900548‑2900450
                                                                                                                                                                                                                 
ATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTG                                                                                                               <  1:2465286/100‑1
 TTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGGTATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGA                                                                                                              <  1:715006/100‑1
  TCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG                                                                                                             <  2:762225/100‑1
    GTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAA                                                                                                           <  1:2683608/100‑1
    GTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCCGTGCTTTCCATGGTATTTATTATTTCAATTACTAGAGACCTGAta                                                                                                            >  1:747913/1‑97
      ATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAA                                                                                                         <  2:1815218/100‑1
       tctTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAG                                                                                                        <  1:81720/97‑1
       TTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAG                                                                                                        <  2:3703026/100‑1
       TTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAG                                                                                                        <  2:2615029/100‑1
        TGTCAAATAATTTTAAAAAGCAGAAGCTTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGT                                                                                                       <  1:1789336/100‑1
        TGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGT                                                                                                       <  1:1047670/100‑1
        TGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGT                                                                                                       <  2:1208967/100‑1
         GTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTA                                                                                                      >  1:977094/1‑100
         GTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTA                                                                                                      >  1:252208/1‑100
         GTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTA                                                                                                      >  2:1718558/1‑100
         GTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTA                                                                                                      >  2:2024132/1‑100
          TCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGaga                                                                                                     >  2:81720/1‑97
                 ATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCC                                                                                              >  2:160916/1‑100
                 ATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCC                                                                                              >  2:160828/1‑100
                                  CGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTT                                                                             <  1:275548/100‑1
                                     GATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTC                                                                          <  1:3269899/100‑1
                                      ATTATTCTCACACAACACCTCTGCTTGCCATGTTATTTATTATTACAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTC                                                                          <  1:3603724/99‑1
                                       TTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTC                                                                        <  2:2334499/100‑1
                                        TACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGA‑TACTTTTCTCAG                                                                      <  1:2369489/100‑1
                                         ACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAG                                                                      <  1:1330529/100‑1
                                         ACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAG                                                                      <  1:3673727/100‑1
                                          CTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGG                                                                     <  2:2463635/100‑1
                                          CTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGG                                                                     <  2:3106708/100‑1
                                          CTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGG                                                                     <  1:160916/100‑1
                                          CTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGG                                                                     <  2:1722998/100‑1
                                          CTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGG                                                                     <  2:510359/100‑1
                                          CTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGG                                                                     <  2:755765/100‑1
                                          CTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGG                                                                     <  2:1182163/100‑1
                                          CTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGG                                                                     <  2:1406223/100‑1
                                          CTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATCTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGG                                                                     <  2:1891613/100‑1
                                          CTCTCACACAACACCTCTGCTTTACATTTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGG                                                                     <  1:732839/100‑1
                                           TCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGG                                                                     <  1:160828/99‑1
                                           TCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTGCTCAG                                                                      <  1:835525/98‑1
                                           TCTCACACAACACCTCTGCTTTACATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCTGCCCTTTCAGGTGGATTACTTTTCTCAGGT                                                                    <  1:2331205/100‑1
                                               ACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTC                                                                 <  1:2103973/99‑1
                                                   AACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTA                                                            <  2:194780/100‑1
                                                                                                   GAGAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAA            >  2:2139674/1‑100
                                                                                                     GAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATC          >  1:2681501/1‑100
                                                                                                     GAAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATC          >  2:810/1‑100
                                                                                                      AAACGTAAGCCGCACTTTCAGGTGTATTACTTTTCTCAGGTCTCTAGTAATTGAAATATTAAATAACATGGAAAGCAGAGTGGTTGTGTGAGAGTAATC          <  1:397323/99‑1
                                                                                                      AAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCTGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCA         >  1:1966677/1‑100
                                                                                                      AAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCA         >  2:1757460/1‑100
                                                                                                      AAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCA         <  1:158182/100‑1
                                                                                                      AAAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCA         >  1:695906/1‑100
                                                                                                       AAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCAC        >  2:3209913/1‑100
                                                                                                       AAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCAC        >  1:3002766/1‑100
                                                                                                       AAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCAC        >  2:2452390/1‑100
                                                                                                       AAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCAC        >  2:2195958/1‑100
                                                                                                       AAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCAC        >  2:1140627/1‑100
                                                                                                       AAAGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCAC        >  1:2732568/1‑100
                                                                                                        AAGTAAGGCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCACG       >  2:1944419/1‑100
                                                                                                         AGTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCACGC      >  2:3107100/1‑100
                                                                                                          GTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCACGCT     >  1:3483674/1‑100
                                                                                                          GTAAGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCACGCT     >  2:224990/1‑100
                                                                                                             AGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCACGCTTCT  <  1:3535398/100‑1
                                                                                                             AGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCACGCTTCT  <  1:810/100‑1
                                                                                                             AGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAAAGGTGTTGTGTGAGAGTAATCACGCTTCT  >  1:1566368/1‑100
                                                                                                                                                                                                                 
ATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2900421‑2900530
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagaaaagtaaGCCGCCCTTTCAGGTGGATTACTTTTCTCAGGTCTCTAGTAATTGAAATAATAAATAACATGGAAAGCAGAGGTGTTGTGTGAGAGTAATCACGCTTCT  <  NC_000913/2900548‑2900450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.