New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3620123 =	NA (NA)	7 (0.060)	5/166	NT	100%	coding (932/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
	?	NC_000913	3620147 =	0 (0.000)					coding (956/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

CAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGG  >  NC_000913/3620049‑3620221                                                                           |                                                                                                   cAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGC                                                                           <  2:977392‑M2/100‑1 (MQ=255) cAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGC                                                                           <  2:71681‑M2/100‑1 (MQ=255) cAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGC                                                                           <  1:2020542‑M2/100‑1 (MQ=255) cAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGC                                                                           <  2:566281‑M2/100‑1 (MQ=255) cAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGC                                                                           <  1:2536152‑M2/100‑1 (MQ=255) cAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGC                                                                           <  1:2672662‑M2/100‑1 (MQ=255) cAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGC                                                                           >  2:3004383‑M2/1‑100 (MQ=255) cAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGC                                                                           <  2:1828286‑M2/100‑1 (MQ=255) cAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGC                                                                           <  1:519399‑M2/100‑1 (MQ=255)  cacGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCG                                                                          <  2:3684675‑M2/99‑1 (MQ=255)  aaCGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCG                                                                          >  1:3567526‑M2/1‑100 (MQ=255)   aCGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGGCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGG                                                                         <  2:3526922‑M2/100‑1 (MQ=255)   aCGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGG                                                                         <  2:3612461‑M2/100‑1 (MQ=255)   aCGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCACGCCGCTGGTGCGCTATGGCTGGACGCCACGCG                                                                          <  2:1345139‑M2/99‑1 (MQ=255)    cGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGC                                                                        >  1:468549‑M2/1‑100 (MQ=255)    cGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGC                                                                        >  1:987473‑M2/1‑100 (MQ=255)    cGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGC                                                                        <  2:553224‑M2/100‑1 (MQ=255)    cGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGC                                                                        <  1:2439833‑M2/100‑1 (MQ=255)     ggCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCG                                                                       >  1:56937‑M2/1‑100 (MQ=255)     ggCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCG                                                                       >  1:3544250‑M2/1‑100 (MQ=255)     ggCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGC                                                                        <  1:1256697‑M2/99‑1 (MQ=255)     ggCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGC                                                                        <  1:2547669‑M2/99‑1 (MQ=255)     ggCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGG                                                                         >  1:1827112‑M2/1‑98 (MQ=255)     ggCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTACCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCG                                                                       >  2:3037704‑M2/1‑100 (MQ=255)                                                              ccTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagac              <  2:1837207‑M2/100‑58 (MQ=255)                                                              ccTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagac              <  2:2064184‑M2/100‑58 (MQ=255)                                                              ccTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccgggtattccgcgtcgtgcgtcagccacacggcagacagac              <  1:1608939‑M2/100‑58 (MQ=255)                                                               cTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagac              <  1:382013‑M2/99‑58 (MQ=255)                                                                tGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacgg            <  2:2406291‑M2/100‑60 (MQ=255)                                                                tGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacgg            <  2:1517886‑M2/100‑60 (MQ=255)                                                                tGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacgg            <  2:1506597‑M2/100‑60 (MQ=255)                                                                 gccgcgccgcTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacgga           <  2:230365‑M2/100‑61 (MQ=255)                                                                 gccgcgccacTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccgggaaatccgggtcgtgcgcctgccacacgccagacagacgg            <  1:3165499‑M2/99‑60 (MQ=255)                                                                   cgcgccgcTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatg         <  1:325911‑M2/100‑63 (MQ=255)                                                                   cgcgccgcTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatg         <  2:1283697‑M2/100‑63 (MQ=255)                                                                    gcgccgcTGGTGCGCTATGGCTGGACGCCCCGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgc        <  2:3184057‑M2/100‑64 (MQ=255)                                                                    gcgccgcTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgc        <  1:2257079‑M2/100‑64 (MQ=255)                                                                          cTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgccgttgt  <  2:3402827‑M2/100‑70 (MQ=255)                                                                           |                                                                                                   CAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGG  >  NC_000913/3620049‑3620221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.