New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4040481NA (NA)78 (0.640) 11/166 NT 100% intergenic (+58/‑36) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon
?NC_000913 = 4040505 0 (0.000)intergenic (+82/‑12) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon

AATGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCG  >  NC_000913/4040401‑4040580
                                                                                |                                                                                                   
aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT                                                                                  <  2:1107078‑M2/100‑1 (MQ=255)
aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT                                                                                  <  1:641875‑M2/100‑1 (MQ=255)
aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT                                                                                  <  2:1549114‑M2/100‑1 (MQ=255)
aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT                                                                                  <  1:328174‑M2/100‑1 (MQ=255)
aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT                                                                                  <  1:3210087‑M2/100‑1 (MQ=255)
aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT                                                                                  <  1:2311365‑M2/100‑1 (MQ=255)
aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT                                                                                  <  1:2160862‑M2/100‑1 (MQ=255)
 aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC                                                                                 >  2:71270‑M2/1‑100 (MQ=255)
 aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC                                                                                 >  2:1222540‑M2/1‑100 (MQ=255)
 aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC                                                                                 <  1:1300373‑M2/100‑1 (MQ=255)
 aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC                                                                                 <  1:730754‑M2/100‑1 (MQ=255)
 aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC                                                                                 <  2:450165‑M2/100‑1 (MQ=255)
 aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC                                                                                 >  2:2411773‑M2/1‑100 (MQ=255)
  tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT                                                                                <  2:866131‑M2/100‑1 (MQ=255)
  tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT                                                                                >  1:1076998‑M2/1‑100 (MQ=255)
   gAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG                                                                               >  1:974133‑M2/1‑100 (MQ=255)
   gAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG                                                                               <  2:61305‑M2/100‑1 (MQ=255)
   gAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGCTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG                                                                               >  1:2998361‑M2/1‑100 (MQ=255)
    atctgtgagTCTTAACCTGACAACGCCTAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT                                                                                >  2:2531348‑M2/5‑98 (MQ=255)
    aaCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA                                                                              >  1:1633674‑M2/1‑100 (MQ=255)
    aaCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA                                                                              >  2:1460116‑M2/1‑100 (MQ=255)
    aaCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA                                                                              <  1:1715228‑M2/100‑1 (MQ=255)
    aaCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA                                                                              >  2:3658191‑M2/1‑100 (MQ=255)
    aaCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA                                                                              >  2:1085634‑M2/1‑100 (MQ=255)
     aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGCTTGAGAGAAGATTTTCACCCTGATACAGATTAAATCCGAACGCAGAACCGGTCTGAT                                                                             <  1:2722159‑M2/100‑1 (MQ=255)
     aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT                                                                             <  2:1358443‑M2/100‑1 (MQ=255)
     aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT                                                                             <  2:3159091‑M2/100‑1 (MQ=255)
     aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT                                                                             <  1:1845149‑M2/100‑1 (MQ=255)
     aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT                                                                             >  2:15277‑M2/1‑100 (MQ=255)
     aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT                                                                             >  2:1165016‑M2/1‑100 (MQ=255)
            ggCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGACCGCTTCTGCGTTCTGATttaatct                                                                      >  2:2698842‑M2/1‑93 (MQ=255)
            ggCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGACCGCTTCTGCGTTCTGATttaatct                                                                      >  2:1602791‑M2/1‑93 (MQ=255)
                             ccGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatct                                                    <  2:3569585‑M2/100‑26 (MQ=255)
                                       tttGGCGGATTGAGAGAAGATTTTCAGCCTGATACAAATTAAATCAGACCGCTTCTGCGTTCTGATttaatctgtatcaggctgaaaatcttctctcaat                                           >  1:1272566‑M2/1‑66 (MQ=255)
                                          ggCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGAGGTCTGATttaatctgtatcaggctgaaaatcttctatcaatcag                                        <  1:3681380‑M2/100‑38 (MQ=255)
                                            cGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGACCGCTTCTGCGTTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgcc                                      >  2:1767742‑M2/1‑61 (MQ=255)
                                               aTTGAGAGAAGATTTTCAGCCTGATACAGATTCAATCAGAACGCAGTAGCGGTCTGATttaatctgtattacgctgaaaatcttctctcaatcagcta                                     <  1:3435190‑M2/98‑41 (MQ=255)
                                                              tCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgt                    <  2:1452854‑M2/100‑58 (MQ=255)
                                                                     gATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggtt             <  2:1387795‑M2/100‑65 (MQ=255)
                                                                        aCAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaag          >  2:3681409‑M2/1‑33 (MQ=255)
                                                                         cAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagc         <  2:2807482‑M2/100‑69 (MQ=255)
                                                                         cAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagc         <  1:997462‑M2/100‑69 (MQ=255)
                                                                          aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcct        <  1:2419134‑M2/100‑70 (MQ=255)
                                                                          aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcc        <  2:3466278‑M2/100‑70 (MQ=255)
                                                                          aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcc        <  2:2884378‑M2/100‑70 (MQ=255)
                                                                           gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctc       <  1:2614826‑M2/100‑71 (MQ=255)
                                                                           gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcct       <  1:851515‑M2/100‑71 (MQ=255)
                                                                           gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcct       <  2:114688‑M2/100‑71 (MQ=255)
                                                                           gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcct       <  2:1171863‑M2/100‑71 (MQ=255)
                                                                            aTTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctca      <  2:35519‑M2/100‑72 (MQ=255)
                                                                            aTTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctca      <  2:674640‑M2/100‑72 (MQ=255)
                                                                            aTTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctca      <  1:2779434‑M2/100‑72 (MQ=255)
                                                                            aTTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctc      <  2:3147753‑M2/100‑72 (MQ=255)
                                                                             ttAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgcaaggttaagcctcac     <  2:3637625‑M2/100‑73 (MQ=255)
                                                                             ttAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctca     <  1:2409996‑M2/100‑73 (MQ=255)
                                                                              tAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcac    <  2:649667‑M2/100‑74 (MQ=255)
                                                                              tAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggatgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcac    <  2:3672304‑M2/100‑74 (MQ=255)
                                                                              naaatCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccggcaaaacagcttcggcgttgtaaggttaagcctcacg    <  1:2042764‑M2/99‑74 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttcatctgtatcaggctgaaaatcttctctcaatcccccaactcaccttcgccgttgtaaggttaagcctcac    <  1:1276263‑M2/99‑74 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacgg   <  2:2167314‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacgg   <  2:2071547‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg   <  1:2666612‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg   <  2:3629363‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg   <  2:2868134‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg   <  2:1179203‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg   <  1:619341‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg   <  1:709258‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacg   <  2:1646742‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcac    <  1:2779689‑M2/99‑74 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg   <  2:1911344‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg   <  1:424201‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg   <  1:429777‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg   <  2:3069575‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg   <  2:3542106‑M2/100‑75 (MQ=255)
                                                                                aaTCAGACCGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg  <  2:1940451‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatccggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg  <  1:1978382‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggt  <  1:2004086‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggt  <  2:2834975‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt  <  2:2430303‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt  <  1:2024716‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt  <  1:1294011‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt  <  1:824295‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcctcggcgttgtaaggttaagcctcacggt  <  1:2194021‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaacccagcttcggcgttgtaaggttaagcctcacgg  <  2:1228582‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg  <  1:2578407‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg  <  1:2787238‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg  <  1:3103986‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg  <  1:641353‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg  <  2:469201‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcac    <  1:1079918‑M2/98‑74 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcatcacgg  <  1:657266‑M2/100‑76 (MQ=255)
                                                                                aaTAAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg   <  1:2103337‑M2/99‑75 (MQ=255)
                                                                                |                                                                                                   
AATGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCG  >  NC_000913/4040401‑4040580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.