New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3336922NA (NA)10 (0.080) 7/166 NT NA noncoding (4/34 nt) REP244 (repetitive extragenic palindromic) element; contains 1 REP sequences REP244 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 3336952 NA (NA)noncoding (34/34 nt) REP244 (repetitive extragenic palindromic) element; contains 1 REP sequences REP244 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 183 total aligned reads displayed.

TAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGT  >  NC_000913/3336823‑3337021
                                                                                                   |                                                                                                   
taataaACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGttt                                                                                                     >  1:3425684/1‑100 (MQ=255)
taagaaACGAGCGAAACATCTTAGAGCAAGGTTGCGCTAGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGttt                                                                                                     >  1:1231674/1‑100 (MQ=255)
    aaaCCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTgccg                                                                                                 <  1:1764920‑M1/100‑5 (MQ=255)
    aaaCCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTgccg                                                                                                 <  2:242814‑M1/100‑5 (MQ=255)
     aaCCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTgccgg                                                                                                <  2:951188‑M1/100‑6 (MQ=255)
     aaCCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTgccgg                                                                                                <  2:235842‑M1/100‑6 (MQ=255)
     aaCCAGAGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTgccgg                                                                                                <  1:3142041‑M1/100‑6 (MQ=255)
        cAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACa                                                                                             <  2:2444960/100‑1 (MQ=255)
        cAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACa                                                                                             >  1:1679472/1‑100 (MQ=255)
         aGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAg                                                                                            >  1:3276020/1‑100 (MQ=255)
           cGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGc                                                                                          <  1:2668134/100‑1 (MQ=255)
             aaaCATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCgg                                                                                        >  2:3258338/1‑100 (MQ=255)
             aaaCATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCgg                                                                                        >  1:1142696/1‑100 (MQ=255)
              aaCATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGt                                                                                       >  1:3459380/1‑100 (MQ=255)
                 aTCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTaa                                                                                    >  1:3383460/1‑100 (MQ=255)
                   cTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACg                                                                                  >  2:2567368/1‑100 (MQ=255)
                    ttAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCCACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGc                                                                                 <  2:2603370/100‑1 (MQ=255)
                       gagCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCat                                                                              >  1:1029865/1‑100 (MQ=255)
                       gagCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCat                                                                              >  2:1404793/1‑100 (MQ=255)
                          cAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATC                                                                           <  1:3595396‑M2/100‑1 (MQ=255)
                          cAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATC                                                                           >  1:240386‑M2/1‑100 (MQ=255)
                             aGTTGCGCGGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAATGCCCTATCCGG                                                                        >  1:1935497‑M2/1‑100 (MQ=255)
                              gTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTgccggatatggcgttaaccgcctgtccggc                                                                       <  1:1366815‑M1/100‑31 (MQ=255)
                              gTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGC                                                                       >  2:2562496‑M2/1‑100 (MQ=255)
                              gTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGC                                                                       >  2:3496461‑M2/1‑100 (MQ=255)
                                tGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCt                                                                     <  2:3296068/100‑1 (MQ=255)
                                 gcgcTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTg                                                                    <  2:2889406/100‑1 (MQ=255)
                                   gcTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTgccggatatggcgttaaccgcctgtccggcaaacc                                                                  <  2:231714‑M1/100‑36 (MQ=255)
                                   gcTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTgccggatatggcgttaaccgcctgtccggcaaacc                                                                  <  2:1825680‑M1/100‑36 (MQ=255)
                                    cTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGaaa                                                                 >  1:392422/1‑100 (MQ=255)
                                     tGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTgccggatatggcgttaaccgcctgtccggcaaacctg                                                                <  2:695798‑M1/100‑38 (MQ=255)
                                      ggCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGaaaaa                                                               >  1:1065223/1‑100 (MQ=255)
                                       ggataaataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGaaaaaa                                                              <  2:3628080/98‑1 (MQ=255)
                                       gCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACTGGCGGTTAACGCCATATTCGGCCTGaaaaca                                                              <  2:2488533/100‑3 (MQ=255)
                                        cATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAAt                                                             <  2:1619048/100‑1 (MQ=255)
                                         ataaataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAAtt                                                            <  2:2986927/100‑1 (MQ=255)
                                         ataaataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAAtt                                                            <  2:2631833/100‑1 (MQ=255)
                                         ataaataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAAtt                                                            <  2:1501086/100‑1 (MQ=255)
                                             ataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAAc                                                        <  1:2282711/100‑1 (MQ=255)
                                             ataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAAc                                                        >  1:2559095/1‑100 (MQ=255)
                                             ataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAAc                                                        >  1:3576703/1‑100 (MQ=255)
                                                aGCAAAAAGCCTCGCTGATAAAGCAGACAAGGCTCGACTGGCAGGCAGGTTTGGCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACg                                                       <  1:3528123/98‑1 (MQ=255)
                                                 gCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAgg                                                    <  2:163665/100‑1 (MQ=255)
                                                 gCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAgg                                                    >  2:1309220/1‑100 (MQ=255)
                                                  cAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGc                                                   <  2:1023215/100‑1 (MQ=255)
                                                  cAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGc                                                   <  2:1029871/100‑1 (MQ=255)
                                                    aaaaGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAg                                                 <  2:3576730/100‑1 (MQ=255)
                                                      aaGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGaa                                               <  2:3276045/100‑1 (MQ=255)
                                                       aGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAAc                                              <  1:568826/100‑1 (MQ=255)
                                                        gCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACa                                             >  1:122686/1‑100 (MQ=255)
                                                        gCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACa                                             >  2:1968975/1‑100 (MQ=255)
                                                        gCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACa                                             >  2:26927/1‑100 (MQ=255)
                                                         ccTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACAt                                            >  1:2113813/1‑100 (MQ=255)
                                                          cTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATc                                           <  1:2065985/100‑1 (MQ=255)
                                                          cTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATc                                           >  2:58547/1‑100 (MQ=255)
                                                          cTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATc                                           >  2:311509/1‑100 (MQ=255)
                                                           tCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATca                                          <  2:2204651/100‑1 (MQ=255)
                                                            cGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATcag                                         <  1:1243120/100‑1 (MQ=255)
                                                             gCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATcagc                                        <  1:3334729/100‑1 (MQ=255)
                                                              cTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATcagca                                       <  2:1304835/100‑1 (MQ=255)
                                                              cTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATcagca                                       <  2:550272/100‑1 (MQ=255)
                                                               tGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATcagcag                                      >  1:1499068/1‑100 (MQ=255)
                                                                gATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAgg                                     <  1:3279869/100‑1 (MQ=255)
                                                                     aTCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAAt                                >  2:1559957/1‑100 (MQ=255)
                                                                     aTCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAAt                                >  2:1098651/1‑100 (MQ=255)
                                                                     aTCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGACGTTAACGCCATATCCGGCATGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAAt                                >  1:2015392/1‑100 (MQ=255)
                                                                      tCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAAtt                               <  2:2268169/100‑1 (MQ=255)
                                                                      tCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAAtt                               <  2:2482606/100‑1 (MQ=255)
                                                                       cAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATta                              <  2:169668/100‑1 (MQ=255)
                                                                        aGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATtat                             >  2:13381/1‑100 (MQ=255)
                                                                        aGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATtat                             <  2:2089902/100‑1 (MQ=255)
                                                                         gACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGACAAATtata                            <  2:2111296/100‑1 (MQ=255)
                                                                             aGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAAt                        <  1:1625248/100‑1 (MQ=255)
                                                                              ggCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACaa                         >  2:2249736/1‑98 (MQ=255)
                                                                              ggCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAAtt                       >  1:2172826/1‑100 (MQ=255)
                                                                              ggCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAAtt                       >  1:3496154/1‑100 (MQ=255)
                                                                                cTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTc                     >  2:1609706/1‑100 (MQ=255)
                                                                                     cTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAg                <  2:277769/100‑1 (MQ=255)
                                                                                       tGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGTCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAggg              <  1:693763/100‑1 (MQ=255)
                                                                                       tGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAggg              <  1:2778286/100‑1 (MQ=255)
                                                                                       tGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAggg              <  2:2910357/100‑1 (MQ=255)
                                                                                       tGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAggg              <  2:3025903/100‑1 (MQ=255)
                                                                                        gcaggcagGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGt             <  2:2156174/100‑1 (MQ=255)
                                                                                        gcaggcagGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGt             >  2:540273/1‑100 (MQ=255)
                                                                                        gcaggcagGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGt             <  1:2642064/100‑1 (MQ=255)
                                                                                         caggcaggTTTGCCGGACAGGCGGTTAACGCCATATCCGGCaaacctgcctgcaagtcgagccttgtctgatttatcagcgaggctttttgcttatttat            <  1:1823512‑M2/100‑60 (MQ=255)
                                                                                          aggcaggTTTGACGGACAGGCGGGTAACGCCATATCCGGCTTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGt             <  1:1649811/98‑1 (MQ=255)
                                                                                           ggcaggTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGtata          >  2:2184274/1‑100 (MQ=255)
                                                                                           ggcaggTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGtata          <  2:489658/100‑1 (MQ=255)
                                                                                           ggcaggTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGtata          >  2:2186313/1‑100 (MQ=255)
                                                                                           ggcaggTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGtata          <  1:2055649/100‑1 (MQ=255)
                                                                                              aggTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATacac       <  2:2333300/100‑1 (MQ=255)
                                                                                               ggTTTGCCGGACAGGCGGTTAACGCCATATCCGGCaaacctgcctgcaagtcgagccttgtctgatttatcagcgaggctttttgcttatttatgccagc      <  2:1825680‑M2/100‑66 (MQ=255)
                                                                                               ggTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACt      >  2:1730977/1‑100 (MQ=255)
                                                                                                gTTTGCCGGACAGGCGGTTAACGCCATATCCGGCaaacctgcctgcaagtcgagccttgtctgatttatcagcgaggctttttgcttatttatgccagcg     <  1:283565‑M2/100‑67 (MQ=255)
                                                                                                 tttGCCGGACAGGCGGTTAACGCCATATCCGGCaaacctgcctgcaagtcgagccttgtctgatttatcagcgaggctttttgcttatttatgccagcgc    <  1:1159300‑M2/100‑68 (MQ=255)
                                                                                                 tttGCCGGACAGGCGGTTAACGCCATATCCGGCaaacctgcctgcaagtcgagccttgtctgatttatcagcgaggctttttgcttatttatgccagcgc    <  1:2998201‑M2/100‑68 (MQ=255)
                                                                                                  ttGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTg   <  2:3053995/100‑1 (MQ=255)
                                                                                                   tGCCGGACAGGCGGTTAACGCCATATCCGGCaaacctgcctgcaagtcgagccttgtctgatttatcagcgaggctttttgcttatttatgccagcgcaa  <  1:948465‑M2/100‑70 (MQ=255)
                                                                                                   tGCCGGACAGGCAGTTAACGCCATATCCGGCATTAAAAAATTTAACGAGGCAGGACATCAGCAGGCAAATTATACAATTGCGCCAGTGTATACACATTGt  <  1:869361/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
TAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGT  >  NC_000913/3336823‑3337021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.