New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3765531 =	NA (NA)	18 (0.140)	6/168	NT	100%	coding (3349/4134 nt)	rhsA	Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor
	?	NC_000913	3765547 =	0 (0.000)					coding (3365/4134 nt)	rhsA	Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor

TGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCT  >  NC_000913/3765448‑3765646                                                                                                    |                                                                                                    gtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcgg                                                                                                     <  1:714901‑M2/1‑1 (MQ=255) gtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcgg                                                                                                     >  1:1985072‑M2/100‑100 (MQ=255)  tcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccatcggc                                                                                                    >  2:814897‑M2/99‑100 (MQ=255)  tcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggc                                                                                                    <  1:3096107‑M2/2‑1 (MQ=255)   cgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcg                                                                                                   >  1:3037048‑M2/98‑100 (MQ=255)   cgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcg                                                                                                   >  1:2840880‑M2/98‑100 (MQ=255)    gcagtggtacaggtggatttttcgtgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcgg                                                                                                  >  2:3210788‑M2/97‑100 (MQ=255)    gcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcgg                                                                                                  >  2:617542‑M2/97‑100 (MQ=255)    gcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcgg                                                                                                  <  2:3349662‑M2/4‑1 (MQ=255)     tccgatctcaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                                 <  1:436497‑M2/5‑1 (MQ=255)     cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                                 <  2:2145663‑M2/5‑1 (MQ=255)     cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                                 <  2:2895110‑M2/5‑1 (MQ=255)     cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                                 <  2:1163572‑M2/5‑1 (MQ=255)      agtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                                 <  1:533280‑M2/5‑1 (MQ=255)             caggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggcagatcgga                                                                                         >  2:436498‑M2/88‑92 (MQ=255)                                                                    tccacggtcaggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAc                                  >  2:1830858‑M2/33‑100 (MQ=255)                                                                          gtcaggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTAc                            >  1:1291161‑M2/27‑100 (MQ=255)                                                                             gtcaggccgcacgatgccagccaGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCAc                         >  2:2994546‑M2/24‑100 (MQ=255)                                                                             aggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCAc                         >  1:79711‑M2/24‑100 (MQ=255)                                                                              ggccgcatgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAACCCAGATGGACCCGGCGTACACGCCGGCGCGAAAACTCCACCTCTACCAc                         >  1:149694‑M2/23‑99 (MQ=255)                                                                              ggccgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTACCACt                        >  2:2065507‑M2/23‑100 (MQ=255)                                                                              ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt                        >  2:2108854‑M2/23‑100 (MQ=255)                                                                              ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt                        >  2:837912‑M2/23‑100 (MQ=255)                                                                              ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt                        >  2:3079795‑M2/23‑100 (MQ=255)                                                                              ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt                        >  2:880967‑M2/23‑100 (MQ=255)                                                                               gccgcacgatgccagccagcgGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt                        >  2:1773165‑M2/22‑99 (MQ=255)                                                                               gccgcacgatgccagccagcgGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTg                       >  2:13094‑M2/22‑100 (MQ=255)                                                                               gccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTg                       >  2:942594‑M2/22‑100 (MQ=255)                                                                               gccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTg                       >  1:2761632‑M2/22‑100 (MQ=255)                                                                                ccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGc                      >  1:3398596‑M2/21‑100 (MQ=255)                                                                                aggccgcacgatgccagccaGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGc                      >  2:2559324‑M2/21‑100 (MQ=255)                                                                                aggccgcacgatgccagccaGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGc                      >  2:1489255‑M2/21‑100 (MQ=255)                                                                                aggccgcacgatgccagccaGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGc                      >  1:2184556‑M2/21‑100 (MQ=255)                                                                                                    GCGGCCTGACCGTGGAGCAGATGCAAAACCAGATTGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCt  >  2:1389801‑M2/1‑100 (MQ=255)                                                                                                    GCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCt  <  2:30314‑M2/100‑1 (MQ=255)                                                                                                    GCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCt  <  1:2759099‑M2/100‑1 (MQ=255)                                                                                                    |                                                                                                    TGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCT  >  NC_000913/3765448‑3765646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.