New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4254000NA (NA)10 (0.080) 6/164 NT NA noncoding (100/130 nt) RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
?NC_000913 = 4254030 NA (NA)noncoding (130/130 nt) RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site

Only 100 of 218 total aligned reads displayed.

TGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCATCGT  >  NC_000913/4253931‑4254129
                                                                                                   |                                                                                                   
tGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGC                                                                                                     >  2:129750‑M2/1‑100 (MQ=255)
  ccTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCaa                                                                                                   >  2:267124/1‑100 (MQ=255)
    tGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAAtt                                                                                                 >  2:2362580/1‑100 (MQ=255)
     gATGCGCGGCGCTTCTCAGGCCTACACAACACAACGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATtc                                                                                                >  2:702985/1‑100 (MQ=255)
       tGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATtctc                                                                                              <  2:1762744/100‑1 (MQ=255)
         cgcgGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATtctctc                                                                                            <  2:2785261/100‑1 (MQ=255)
          gcggcgCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTctctct                                                                                           <  2:3347719/100‑1 (MQ=255)
             gcgcTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGAt                                                                                        <  1:261283/100‑1 (MQ=255)
                 ttCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTAcc                                                                                    <  1:3363573/100‑1 (MQ=255)
                  tctcAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTAccn                                                                                   <  2:3154322/100‑2 (MQ=255)
                  tctcAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTAccc                                                                                   >  1:2108659/1‑100 (MQ=255)
                  tctcAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTAccc                                                                                   >  1:3121350/1‑100 (MQ=255)
                  tctcAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTAGCCGCATCCGGCAATTCTCTCTGATTAc                                                                                     >  1:1234723/1‑98 (MQ=255)
                   ctcAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCt                                                                                  >  2:2987879/1‑100 (MQ=255)
                     cAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTc                                                                                >  1:1617759/1‑100 (MQ=255)
                         ccTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGccc                                                                            >  2:894913/1‑100 (MQ=255)
                         ccTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGccc                                                                            <  2:2138574/100‑1 (MQ=255)
                           tACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTg                                                                          >  2:3697297/1‑100 (MQ=255)
                            acacaacacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGc                                                                         >  1:768750/1‑100 (MQ=255)
                              acaacacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCg                                                                        <  1:2740657/99‑1 (MQ=255)
                               caacacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTc                                                                      >  1:1093395/1‑100 (MQ=255)
                               caacacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTc                                                                      >  1:907629/1‑100 (MQ=255)
                               caacacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTc                                                                      >  2:1956349/1‑100 (MQ=255)
                                 acacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGc                                                                    <  2:3522842/100‑1 (MQ=255)
                                  cacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCa                                                                   >  2:1933134/1‑100 (MQ=255)
                                  cacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCa                                                                   >  2:247241/1‑100 (MQ=255)
                                    caTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCAct                                                                 >  1:1411369/1‑100 (MQ=255)
                                     aTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCActc                                                                >  2:406672/1‑100 (MQ=255)
                                       cGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACtctc                                                              >  2:2009436/1‑100 (MQ=255)
                                       cGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACtctc                                                              <  2:1682881/100‑1 (MQ=255)
                                       cGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACtctc                                                              <  1:3454338/100‑1 (MQ=255)
                                       cGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACtctc                                                              <  1:1961162/100‑1 (MQ=255)
                                        gCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCCGCGTCGCACtctc                                                              <  2:2512226/99‑1 (MQ=255)
                                          aaTTTATTGAATTTGCAGATAATGGAAGGCCGGATAAGGCGTTTTCGCAGCATCCGGCAATTCTCTCTGATTAGCCTTCGCCCTGCGTCGCACTCTCAAt                                                           >  1:1782315/1‑100 (MQ=38)
                                           aTTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATc                                                          <  1:2786947/100‑1 (MQ=255)
                                            tttATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCg                                                         <  2:2366813/100‑1 (MQ=255)
                                            tttATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCg                                                         <  2:1118809/100‑1 (MQ=255)
                                              tATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTc                                                       <  2:49187/100‑1 (MQ=255)
                                               aTTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCa                                                      >  1:2069583/1‑100 (MQ=255)
                                               aTTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCa                                                      <  2:3029311/100‑1 (MQ=255)
                                               aTTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCa                                                      >  2:3189897/1‑100 (MQ=255)
                                                 tGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCaaa                                                    >  1:1821435/1‑100 (MQ=255)
                                                  gAATTTGCAGATTATGGAAGGCCGTATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTCATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAAc                                                   <  1:1475683/100‑1 (MQ=255)
                                                  gAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAAc                                                   >  1:2906484/1‑100 (MQ=255)
                                                   aaTTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACg                                                  <  1:321944/100‑1 (MQ=255)
                                                    aTTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGc                                                 >  2:1970336/1‑100 (MQ=255)
                                                     tttGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCa                                                <  2:1399133/100‑1 (MQ=255)
                                                     tttGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCa                                                >  2:1195317/1‑100 (MQ=255)
                                                      ttGGAGATTATTGAAGGCCGGATGAGGCGTTTTCGCCGCTCCCGGCAATTCTCTCTGATTACCCTTCGCCCTTCTTCGCACTCTCAATCGGCACTCGCa                                                <  1:3698835/99‑1 (MQ=25)
                                                      ttGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCAc                                               <  2:336749/100‑1 (MQ=255)
                                                      ttGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCAc                                               >  1:1383949/1‑100 (MQ=255)
                                                         cAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTc                                            <  2:3013017/100‑1 (MQ=255)
                                                         cAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTc                                            >  2:3486839/1‑100 (MQ=255)
                                                         cAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAAATCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCACACGCACGTc                                            >  1:3415893/1‑100 (MQ=255)
                                                           ttccgatctaGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTg                                          <  1:1583542/91‑1 (MQ=255)
                                                           gATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTg                                          <  1:2332446/100‑1 (MQ=255)
                                                             ttATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGAt                                        <  2:2030754/100‑1 (MQ=255)
                                                              tATGGAAGGCCGGATAAGGCGTTTTCTCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATg                                       <  1:2452787/100‑1 (MQ=255)
                                                                 ggAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTaa                                    >  1:2399166/1‑100 (MQ=255)
                                                                   aaGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATc                                  <  2:739592/100‑1 (MQ=255)
                                                                    aGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGagatcggaa                                 >  2:1583550/1‑92 (MQ=255)
                                                                    aGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCa                                 <  2:2298201/100‑1 (MQ=255)
                                                                    aGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCa                                 <  2:2100377/100‑1 (MQ=255)
                                                                     ggCCGGATAAGGCGTTTTCGCCGCATCCGGCcttccataatctgcaaattcaataaattgcgatgtgttgtgtaggcctgagaagcgccgcgcatcaggc                                <  2:911950‑M2/100‑70 (MQ=255)
                                                                     ggCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTATCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCaa                                >  1:3135247/1‑100 (MQ=255)
                                                                     ggCCGGATAAGGCGTTTTCGCCGCATACGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCa                                 >  1:2904736/1‑99 (MQ=255)
                                                                      gCCGGATAAGGCGTTTTCGCCGCATCCGGCcttccataatctgcaaattcaataaattgcgatgtgttgtgtaggcctgagaagcgccgcgcatcaggca                               <  1:2576244‑M2/100‑71 (MQ=255)
                                                                      gCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAAc                               <  1:2975408/100‑1 (MQ=255)
                                                                      gCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAAc                               >  2:531453/1‑100 (MQ=255)
                                                                      gCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAAc                               >  2:3664081/1‑100 (MQ=255)
                                                                       ccGGATAAGGCGTTTTCGCCGCATCCGGCcttccataatctgcaaattcaataaattgcgatgtgttgtgtaggcctgagaagcgccgcgcatcaggcaa                              <  1:2025829‑M2/100‑72 (MQ=255)
                                                                       ccGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACt                              >  1:3181024/1‑100 (MQ=255)
                                                                            tAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGcc                         <  1:1195311/100‑1 (MQ=255)
                                                                               ggCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATTAACTCCGCCat                       >  2:1464303/1‑98 (MQ=255)
                                                                               ggCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGc                      >  1:440588/1‑100 (MQ=255)
                                                                               ggCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGc                      >  2:3271705/1‑100 (MQ=255)
                                                                               ggCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGc                      >  1:2989556/1‑100 (MQ=255)
                                                                                gCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCa                     <  2:1282612/100‑1 (MQ=255)
                                                                                 cGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCa                     <  1:2223050/99‑1 (MQ=255)
                                                                                  gTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAAc                   >  2:1387887/1‑100 (MQ=255)
                                                                                   ttttCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACt                  <  2:260439/100‑1 (MQ=255)
                                                                                    tttCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTg                 >  1:1284224/1‑100 (MQ=255)
                                                                                    tttCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTg                 <  1:163236/100‑1 (MQ=255)
                                                                                     ntCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGa                >  2:1673527/2‑100 (MQ=255)
                                                                                      tCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGAt               <  1:1022078/100‑1 (MQ=255)
                                                                                      tCGCCGCATCCCGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCATTCGTCAAACGCACGTCTTATGTAATCAACTCAGCCAGCAACTGAt               >  1:608197/1‑100 (MQ=255)
                                                                                       cgccttaTCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATa              <  1:226046/94‑1 (MQ=255)
                                                                                          cgcATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAAc           <  2:1821446/100‑1 (MQ=255)
                                                                                             aTCCGGCcttccataatctgcaaattcaataaattgcgatgtgttgtgtaggcctgagaagcgccgcgcatcaggcaacccagaagaaagccggatgatc        <  1:1808094‑M2/100‑94 (MQ=255)
                                                                                              tCCGGCcttccataatctgcaaattcaataaattgcgatgtgttgtgtaggcctgagaagcgccgcgcatcaggcaacccagaagaaagccggatgatca       >  1:2430617‑M2/1‑6 (MQ=255)
                                                                                              tCCGGCcttccataatctgcaaattcaataaattgcgatgtgttgtgtaggcctgagaagcgccgcgcatcaggcaacccagaagaaagccggatgatca       >  2:456550‑M2/1‑6 (MQ=255)
                                                                                              tCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTc       >  1:729746/1‑100 (MQ=255)
                                                                                                cGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCAt     <  2:2449116/100‑1 (MQ=255)
                                                                                                cGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCAt     >  1:2181174/1‑100 (MQ=255)
                                                                                                cGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCAt     >  2:2261907/1‑100 (MQ=255)
                                                                                                cGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCAt     >  1:950446/1‑100 (MQ=255)
                                                                                                cGGCAATTCTCTCTGATTACCCTTCGCCCTGCCTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCAt     >  1:3031506/1‑100 (MQ=255)
                                                                                                 ggCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCATc    >  1:1451529/1‑100 (MQ=255)
                                                                                                  gCcttccataatctgcaaattcaataaattgcgatgtgttgtgtaggcctgagaagcgccgcgcatcaggcaacccagaagaaagccggatgatcatccg   >  2:659627‑M2/1‑2 (MQ=255)
                                                                                                   cAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCATCGt  <  1:3583596/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
TGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCATCGT  >  NC_000913/4253931‑4254129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.