New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4631870 =143 (1.090)7 (0.060) 4/166 NT 5.0% coding (1138/1938 nt) slt lytic murein transglycosylase, soluble
?NC_000913 4631896 = 131 (1.070)coding (1164/1938 nt) slt lytic murein transglycosylase, soluble
Rejected: Frequency below cutoff threshold.

Only 100 of 180 total aligned reads displayed.

ATTGCTGGAACGCGGACGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTG  >  NC_000913/4631797‑4631994
                                                                                                   |                                                                                                  
catctccggcccctgagtcagggcgctgtcaacattctgcggcgctttatcaatcttcagctcatactcttcgCCGATGGTTGCAGCACAACGCATCGGc                                                                                                    >  2:3268931‑M1/74‑100 (MQ=255)
 ttGCTGGAACGCGGACGTGAAGCTGAAGCAAAAGATATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCg                                                                                                   <  1:585852/100‑1 (MQ=255)
 ttGCTGGAACGCGGACGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCg                                                                                                   <  1:3666489/100‑1 (MQ=255)
 ttGCTGGAACGCGGACGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCg                                                                                                   >  2:1237836/1‑100 (MQ=255)
   gCTGGAACGCGGACGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGaa                                                                                                 >  1:335444/1‑100 (MQ=255)
   gCTGGAACGCGGACGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGaa                                                                                                 >  2:2133880/1‑100 (MQ=255)
    cTGGAACGCGGACGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAag                                                                                                <  1:1300305/100‑1 (MQ=255)
    cTGGAACGCGGACGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAag                                                                                                >  1:2329500/1‑100 (MQ=255)
      ggAACGCGGACGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAagag                                                                                              <  1:899535/100‑1 (MQ=255)
      ggAACGCGGACGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAagag                                                                                              >  1:2981755/1‑100 (MQ=255)
      ggAACGCGGACGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAagag                                                                                              >  1:285631/1‑100 (MQ=255)
        aaCGCGGACGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTa                                                                                            <  2:1363870/100‑1 (MQ=255)
         aCGCGGACGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTAt                                                                                           >  2:782700/1‑100 (MQ=255)
         aCGCGGACGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTAt                                                                                           <  2:1099554/100‑1 (MQ=255)
          tccgatcttgaagctgaagcAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATg                                                                                          <  1:3638441/92‑1 (MQ=255)
          cgcgGACGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATg                                                                                          <  2:1848028/100‑1 (MQ=255)
          cgcgGACGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTGCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATg                                                                                          <  2:2802394/100‑1 (MQ=255)
            cgGACGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAg                                                                                        <  2:2204172/100‑1 (MQ=255)
            cgGACGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAg                                                                                        >  1:3146271/1‑100 (MQ=255)
            cgGACGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATAAg                                                                                        >  1:2281829/1‑100 (MQ=255)
              gACGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCt                                                                                      <  2:3041459/100‑1 (MQ=255)
                cGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCt                                                                                      <  1:2275299/98‑1 (MQ=255)
                  tgaagctgaagcAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGACGAGTATGAgatcgga                                                                                  >  2:3638470/1‑94 (MQ=255)
                   gaagctgaagcAAAAGAGATTTTGCATCTACGCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGa                                                                                 <  1:110342/100‑1 (MQ=255)
                   gaagctgaagcAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGa                                                                                 <  2:2238244/100‑1 (MQ=255)
                     agctgaagcAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGAtt                                                                               >  2:3472769/1‑100 (MQ=255)
                       ctgaagcAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGa                                                                             <  2:2660450/100‑1 (MQ=255)
                        tgaagcAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACACCGCATCGGCGAAGAGTATGAGCTGAAGATTGa                                                                             >  2:1169872/1‑99 (MQ=255)
                        tgaagcAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGAt                                                                            <  1:1897026/100‑1 (MQ=255)
                         gaagcAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGAt                                                                            <  2:2775686/99‑1 (MQ=255)
                         gaagcAAAAGAGATTTTGCATCAACGCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATa                                                                           <  1:1906488/100‑1 (MQ=255)
                           agcAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATaaa                                                                         >  2:1414010/1‑100 (MQ=255)
                            gcAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAg                                                                        >  2:1899491/1‑100 (MQ=255)
                            gcAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAg                                                                        <  2:1229783/100‑1 (MQ=255)
                               aaaGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAgcgc                                                                     <  2:3660170/100‑1 (MQ=255)
                                  gagaTGTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGcgccgc                                                                  <  1:3272359/100‑1 (MQ=255)
                                     aTTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGa                                                               <  1:332714/100‑1 (MQ=255)
                                     aTTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAAcgcc                                                                    >  1:2492925/1‑95 (MQ=255)
                                      ttttGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGaa                                                              <  1:640411/100‑1 (MQ=255)
                                       tttGCATCAACTAATGCCACAGCGTGGTTTCTACGCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGGGCTGAAGATTGACAAAGCGCCGCAGa                                                               >  1:1793255/1‑98 (MQ=255)
                                         tGCATCAACTCATGCAACAGCGTGGTGTCTAACCGAGTGGTGCAACAAAACGAACAGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGt                                                           <  1:1534240/100‑1 (MQ=255)
                                          gCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGtt                                                          >  2:2329436/1‑100 (MQ=255)
                                          gCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGtt                                                          <  2:1861978/100‑1 (MQ=255)
                                          gCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGCATGAGCCGAAGATTGATAAAGCGCCGCAGAATGtt                                                          >  1:301590/1‑100 (MQ=255)
                                           cATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTg                                                         <  1:412709/100‑1 (MQ=255)
                                           cATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTg                                                         <  2:180654/100‑1 (MQ=255)
                                               aaCTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAg                                                     >  2:148293/1‑100 (MQ=255)
                                                 cTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAgcg                                                   <  2:2052761/100‑1 (MQ=255)
                                                 cTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAgcg                                                   >  2:2426227/1‑100 (MQ=255)
                                                    aTGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGccc                                                >  2:1503609/1‑100 (MQ=255)
                                                     tGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCt                                               >  2:3220371/1‑100 (MQ=255)
                                                     tGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCt                                               >  2:84769/1‑100 (MQ=255)
                                                        aaCAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGAc                                            <  1:1170008/100‑1 (MQ=255)
                                                          cAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTc                                          >  2:2143028/1‑100 (MQ=255)
                                                            gCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAg                                        <  2:2265724/100‑1 (MQ=255)
                                                             cGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAgg                                       <  2:2001403/100‑1 (MQ=255)
                                                              gTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAggg                                      <  2:2226603/100‑1 (MQ=255)
                                                              gTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAggg                                      >  1:3659412/1‑100 (MQ=255)
                                                               tGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAgggg                                     >  1:2751638/1‑100 (MQ=255)
                                                                ggTTTCTACCCGATGGTTGCCGCACAACGCATCGGCGAGGAGTATGAGCCGAACATTGATGTAGCGCCGCAGAATGTTGACCGCGCCCTGACTCAgggg                                     >  1:1737203/1‑99 (MQ=255)
                                                                  tttCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCg                                  <  1:1290197/100‑1 (MQ=255)
                                                                   ttCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCgg                                 >  2:2845187/1‑100 (MQ=255)
                                                                   ttCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCgg                                 <  2:2749628/100‑1 (MQ=255)
                                                                   ttCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCgg                                 <  1:454608/100‑1 (MQ=255)
                                                                   ttCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCgg                                 >  1:503539/1‑100 (MQ=255)
                                                                   ttCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCgg                                 <  1:2676860/100‑1 (MQ=255)
                                                                   ttCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCgg                                 >  2:3404301/1‑100 (MQ=255)
                                                                     ttcgccgatgcgttgtgctgcaaccatcggCGAAGAGTATGAGATGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTAAGGGGCCgg                                 >  1:3007613‑M2/31‑98 (MQ=255)
                                                                     cTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGgag                               >  1:72856/1‑100 (MQ=255)
                                                                      tACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGgaga                              >  1:1247317/1‑100 (MQ=255)
                                                                      tACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGgaga                              <  2:3211587/100‑1 (MQ=255)
                                                                       cgccgatgcgttgtgctgcaaccatcggCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGgag                               >  1:256250‑M2/29‑98 (MQ=255)
                                                                        gccgatgcgttgtgctgcaaccatcggCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATg                            >  1:1182962‑M2/28‑100 (MQ=255)
                                                                        gccgatgcgttgtgctgcaaccatcggCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATg                            >  2:3268931‑M2/28‑100 (MQ=255)
                                                                        gccgatgcattgtgctgcaaccatcggCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATg                            >  2:1177390‑M2/28‑100 (MQ=255)
                                                                        cccGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATg                            >  2:3457854/1‑100 (MQ=255)
                                                                        cccGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATg                            >  1:2143681/1‑100 (MQ=255)
                                                                        cccGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATg                            >  2:173507/1‑100 (MQ=255)
                                                                         ccgatgcgttgtgctgcaaccatcggCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATgg                           >  2:2958894‑M2/27‑100 (MQ=255)
                                                                         ccgatgcgttgtgctgcaaccatcggCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATgg                           >  2:3056608‑M2/27‑100 (MQ=255)
                                                                         CCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATgg                           >  2:3004967‑M1/1‑100 (MQ=255)
                                                                          CGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGgc                          <  1:2901654‑M1/100‑1 (MQ=255)
                                                                           GATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGgcg                         <  2:469542‑M1/100‑1 (MQ=255)
                                                                             TGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGgcgcg                       >  1:1038122‑M1/1‑100 (MQ=255)
                                                                             TGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGgcgcg                       >  2:4036‑M1/1‑100 (MQ=255)
                                                                             TGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGgcgcg                       >  2:1150669‑M1/1‑100 (MQ=255)
                                                                             TGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGgcgcg                       >  2:1616542‑M1/1‑100 (MQ=255)
                                                                               gTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGcgcgcg                     <  1:1822264/100‑1 (MQ=255)
                                                                                 tGCAGCACAACGCATCGGCGCAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGcgcgcg                     >  1:1579438/1‑98 (MQ=255)
                                                                                  gcagcaCAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTgc                  >  2:3040874/1‑100 (MQ=255)
                                                                                  gcagcaCAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTg                   <  2:1274666/99‑1 (MQ=255)
                                                                                   cagcaCAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTgcg                 >  2:535945/1‑100 (MQ=255)
                                                                                     gcaCAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGcgcg               <  1:495884/100‑1 (MQ=255)
                                                                                     gcaCAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGcgcg               >  2:635020/1‑100 (MQ=255)
                                                                                      cacaACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGa              >  1:3378251/1‑100 (MQ=255)
                                                                                       acaACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAg             >  2:3298288/1‑100 (MQ=255)
                                                                                           cGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGa         <  2:3703059/100‑1 (MQ=255)
                                                                                           cGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGa         <  1:3472742/100‑1 (MQ=255)
                                                                                             catcggCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATg       <  2:108254‑M2/94‑1 (MQ=255)
                                                                                              atcggCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGt      <  1:3696749‑M2/95‑1 (MQ=255)
                                                                                                   |                                                                                                  
ATTGCTGGAACGCGGACGTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTG  >  NC_000913/4631797‑4631994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.