New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 411078 =NA (NA)7 (0.060) 5/164 NT NA noncoding (1/191 nt) REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 2340346 = NA (NA)noncoding (34/82 nt) REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 146 total aligned reads displayed.

CGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACC  >  NC_000913/2340247‑2340445
                                                                                                   |                                                                                                   
cGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                                                     <  2:2562895/100‑1 (MQ=255)
  gCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa                                                                                                   <  1:3604097/100‑1 (MQ=255)
    gTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGTCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACa                                                                                                 <  2:1744942/100‑1 (MQ=255)
     tGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACaa                                                                                                >  1:3009516/1‑100 (MQ=255)
      ggaactgAACTATCTGCTGCACACGCCAAATAAGTGAGCTTGAGCTTGGGCCGCGTCAATGCCTCATGCTACGCTGGCCGCGTCTTATCAGGCCTa                                                                                                   <  1:1374298/91‑1 (MQ=16)
      ggATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACaaa                                                                                               >  1:3202079/1‑100 (MQ=255)
        aTGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATg                                                                                             >  2:961815/1‑100 (MQ=255)
          gtgAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCt                                                                                           <  2:2434704/100‑1 (MQ=255)
          gtgAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCt                                                                                           >  1:469898/1‑100 (MQ=255)
            gAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTcc                                                                                         >  2:278872/1‑100 (MQ=255)
            gAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTcc                                                                                         >  1:3644491/1‑100 (MQ=255)
              aCTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTcccc                                                                                       <  2:2908943/100‑1 (MQ=255)
                 atatGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTa                                                                                    >  1:702423/1‑100 (MQ=255)
                  tatGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAg                                                                                   <  2:315001/100‑1 (MQ=255)
                     gctgcACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGcc                                                                                >  1:3519962/1‑100 (MQ=255)
                     gctgcACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGcc                                                                                >  1:1194452/1‑100 (MQ=255)
                     gctgcACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGcc                                                                                <  2:2560422/100‑1 (MQ=255)
                       tgcACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCgg                                                                              <  2:1231180/100‑1 (MQ=255)
                           cacGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATaa                                                                          >  1:3478030/1‑100 (MQ=255)
                           cacGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATaa                                                                          >  2:1440005/1‑100 (MQ=255)
                             cGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAgg                                                                        >  2:2473371/1‑100 (MQ=255)
                             cGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAgg                                                                        >  1:505824/1‑100 (MQ=255)
                             cGCAGAATAAGTGAGGTTGAAGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAgg                                                                        >  1:2256944/1‑100 (MQ=255)
                              gCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGc                                                                       >  2:1521968/1‑100 (MQ=255)
                              gCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGc                                                                       >  1:612462/1‑100 (MQ=255)
                               cAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCg                                                                      >  1:3046250/1‑100 (MQ=255)
                               cAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCg                                                                      >  2:1620162/1‑100 (MQ=255)
                                aGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGt                                                                     <  2:1080556/100‑1 (MQ=255)
                                 gAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGtt                                                                    >  2:585453/1‑100 (MQ=255)
                                 gAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCAGAtcggaagag                                                                    >  2:623364/1‑92 (MQ=37)
                                  aaTAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGttt                                                                   <  1:2722089/100‑1 (MQ=255)
                                   aTAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTa                                                                  >  1:13828/1‑100 (MQ=255)
                                   aTAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTa                                                                  <  2:2678029/100‑1 (MQ=255)
                                    tAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAc                                                                 >  1:53654/1‑100 (MQ=255)
                                      aGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcg                                                                >  1:2115488/1‑99 (MQ=255)
                                      aGTGAGGTTGATGTTTGGCCGCGCCAATGCCTAATGCGACGCTTGACGCGTCTTATCAGGTCTACAAATGCTCCCCGTAGGCCGGAGAAGGCGTTTa                                                                  >  1:2115435/1‑97 (MQ=37)
                                       gTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgcc                                                              >  1:1065793/1‑100 (MQ=255)
                                       gTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgcc                                                              <  2:2639420/100‑1 (MQ=255)
                                        tGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgccg                                                             <  2:3393505/100‑1 (MQ=255)
                                        tGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgccg                                                             <  2:708142/100‑1 (MQ=255)
                                        tGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCGCCCCGTAGTCCGGATAAGGCGTTTAcgcc                                                              >  1:1659741/1‑99 (MQ=255)
                                         gAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgccgc                                                            >  2:440307/1‑100 (MQ=255)
                                           ggTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCAt                                                          >  2:3489320/1‑100 (MQ=255)
                                           ggTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCAt                                                          >  1:2384485/1‑100 (MQ=255)
                                           ggTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCAt                                                          >  1:1667141/1‑100 (MQ=255)
                                            gTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATc                                                         >  1:607820/1‑100 (MQ=255)
                                             tgtaTGTTTGGCCGCGCCGATGCGTGATGAGACTCTGCCCGCGTCTTATCAGGCCAACAAATGTTCCCCGTAGGCCGGATGCGGCGTAAACGCCTTATcc                                                        <  1:1839782/97‑1 (MQ=16)
                                                aTGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGc                                                     <  1:2930598/100‑1 (MQ=21)
                                                 tGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                    >  1:2876831/1‑100 (MQ=255)
                                                 tGTTTGGCCGCGCCAATGCCTGATGCGACGCGTGCCGCGTCTTATCAGGCGTACAAACGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                    <  1:1096934/100‑1 (MQ=255)
                                                  gTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGcct                                                   <  1:547450/100‑3 (MQ=21)
                                                  gTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaa                                                   >  2:2223522/1‑100 (MQ=255)
                                                  gTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaa                                                   >  2:661688/1‑100 (MQ=255)
                                                  gTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaa                                                   >  2:2225475/1‑100 (MQ=255)
                                                    ttGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAcc                                                 >  2:1853607/1‑100 (MQ=255)
                                                      ggCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGt                                               >  1:1049267/1‑100 (MQ=255)
                                                      ggCCGCGCCAATGCCTGATGCGACGCTGGCAGCGTCTTATCAGGCCGACAGGTGCTCCCCGTAGGCCGGATGCGGCGTAAACGCCTTATACGGcctac                                                 <  1:840920/98‑5 (MQ=16)
                                                       gCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTg                                              >  2:1014557/1‑100 (MQ=255)
                                                        ccGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGc                                             >  1:3629019/1‑100 (MQ=255)
                                                        ccGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGc                                             >  1:3234980/1‑100 (MQ=255)
                                                            gcCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCAACCGTGCCGAc                                         >  2:2386305/1‑100 (MQ=255)
                                                             ccAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGTATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACt                                        <  1:2276396/100‑1 (MQ=255)
                                                             ccAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACt                                        >  2:1606468/1‑100 (MQ=255)
                                                             ccAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACt                                        <  1:1172975/100‑1 (MQ=255)
                                                              cAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCTGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTa                                       >  1:1519646/1‑100 (MQ=255)
                                                                aggcctgataagacgcggcaagcgtcgcatcaggcCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGa                                     >  2:2700220‑M2/36‑100 (MQ=255)
                                                                aTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGa                                     >  2:2010082/1‑100 (MQ=255)
                                                                 tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGAc                                    >  1:2727718/1‑100 (MQ=255)
                                                                 ggcctgataagacgcggcaagcgtcgcatcaggcCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGAc                                    >  1:191336‑M2/35‑100 (MQ=255)
                                                                   ccTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAg                                  >  1:3148567/1‑100 (MQ=255)
                                                                    cTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGt                                 <  2:505826/100‑1 (MQ=255)
                                                                     tGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTg                                >  1:324170/1‑100 (MQ=255)
                                                                      gataagacgcggcaagcgtcgcatcaggcCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGa                               >  2:3373694‑M2/30‑100 (MQ=255)
                                                                       aTGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGAt                              >  2:1765255/1‑100 (MQ=255)
                                                                        tGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGAtt                             <  2:3202103/100‑1 (MQ=255)
                                                                         gCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTa                            >  2:1788044/1‑100 (MQ=255)
                                                                         gCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTa                            <  2:500925/100‑1 (MQ=255)
                                                                         gCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTa                            <  1:1853596/100‑1 (MQ=255)
                                                                          cGACGCTTGCAGCGTCTTATCAGGACTACAAATGCTACCCGTAGGCCGGATAAGACGTTTACGAGGAATACGGCAACCGTGACGACTAGACAGTGTTTa                            >  1:1589209/1‑99 (MQ=21)
                                                                           gACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTAcc                          <  2:3634922/100‑1 (MQ=255)
                                                                           gACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTAcc                          >  2:971863/1‑100 (MQ=255)
                                                                               cTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCAttt                      <  1:2049358/100‑1 (MQ=255)
                                                                               cTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCAttt                      >  2:1547762/1‑100 (MQ=255)
                                                                               cTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGAAAGTGATTACCAttt                      >  2:1460628/1‑100 (MQ=255)
                                                                                  gCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCat                   <  2:800335/100‑2 (MQ=255)
                                                                                  gCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCAc                   <  2:2380474/100‑1 (MQ=255)
                                                                                   ccGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCAc                   >  2:2583811/1‑99 (MQ=255)
                                                                                    cgcgTCTTATCAGGCCTACAAATGCTCCCCGTAGGCAGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCg                 >  2:2606006/1‑100 (MQ=255)
                                                                                    cgagctttATCAGGCCTAAAAATGCTCCCCGTAGTACGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCg                 <  1:2058225/94‑1 (MQ=37)
                                                                                         cTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATc            <  1:2623193/100‑1 (MQ=255)
                                                                                          ttATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTCGACAGTGATTACCATTTCACCGTCATCg           <  1:2724454/100‑1 (MQ=255)
                                                                                          ttATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCg           <  2:1065799/100‑1 (MQ=255)
                                                                                           tATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGa          >  2:1380475/1‑100 (MQ=255)
                                                                                           tATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGa          >  2:3573136/1‑100 (MQ=255)
                                                                                           tATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGAAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGa          >  1:2367935/1‑100 (MQ=255)
                                                                                                ggcCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACaaaa     >  1:571338‑M2/4‑100 (MQ=255)
                                                                                                ggcCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACaaaa     <  1:2589239‑M2/97‑1 (MQ=255)
                                                                                                  cCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAAc   >  2:1144155‑M2/2‑100 (MQ=255)
                                                                                                  cCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAAc   >  2:720592‑M2/2‑100 (MQ=255)
                                                                                                   cTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAAcc  >  2:3682078/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
CGGCGTGGATGTGAACTATATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACC  >  NC_000913/2340247‑2340445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.