BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1040547 =	NA (NA)	5 (0.040)	4/158	NT	NA	noncoding (5/36 nt)	REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences
*	?	NC_000913	1040579 =	NA (NA)	5 (0.040)	4/158	NT	NA	intergenic (+42/‑38)	cbdX/appA	putative cytochrome bd‑II oxidase subunit/phosphoanhydride phosphorylase

Only 100 of 175 total aligned reads displayed.

GATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCATT  >  NC_000913/1040480‑1040678

gATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGca                                                                                                     >  2:3027968/1‑100 (MQ=255)

gATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGca                                                                                                     >  1:2781034/1‑100 (MQ=255)

gATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGca                                                                                                     >  2:3374423/1‑100 (MQ=255)

   gtgtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatc                                                                                                  <  2:157273/100‑1 (MQ=255)

   aaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatc                                                                                                  >  1:3194766‑M1/65‑100 (MQ=255)

     gtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGTTGCGGCGTATTAGCATCGCATCAGGcaaacaa                                                                                                >  2:1465681/1‑100 (MQ=255)

     gtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaa                                                                                                >  2:2141240/1‑100 (MQ=255)

     gtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaa                                                                                                >  1:1515472/1‑100 (MQ=255)

     gtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaa                                                                                                >  1:2575919/1‑100 (MQ=255)

      ttCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaat                                                                                               <  2:1515479/100‑1 (MQ=255)

       ttcttgtcCACGCTTGTGTTTGTATGGCTCGATTTGCGGTTGAAAAGTTCACGAAGTTGGGCCTGATGCTGCGTCTTATCATCGCATCAGGCAATCaata                                                                                              <  1:458523/94‑1 (MQ=255)

         gCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaataat                                                                                            <  2:1779085/100‑1 (MQ=255)

         gCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaataat                                                                                            <  2:2104552/100‑1 (MQ=255)

          ctctCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATg                                                                                           >  2:44891/1‑100 (MQ=255)

            ctcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTc                                                                                         >  1:1036858/1‑100 (MQ=255)

            ctcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTc                                                                                         >  2:1265429/1‑100 (MQ=255)

            ctcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTc                                                                                         >  1:544879/1‑100 (MQ=255)

            ctcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTc                                                                                         >  1:2901102/1‑100 (MQ=255)

             tcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCa                                                                                        <  1:44891/100‑1 (MQ=255)

             tcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCa                                                                                        <  1:3059161/100‑1 (MQ=255)

              ccACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCa                                                                                        <  1:1424884/99‑1 (MQ=255)

              caaCCCTTGTGTTGGTATGGCTGGACCCGCGGCTGAAAAGTTGACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAg                                                                                       >  2:2494481/3‑100 (MQ=255)

               caaccTTGTGTTGGTATGGCTGGACCAGCGTCTGAACAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCAACAGGCAACCAATAATGCCa                                                                                        >  1:3309013/4‑98 (MQ=255)

               cACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa                                                                                      <  2:2901123/100‑1 (MQ=255)

               cACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa                                                                                      <  2:1036864/100‑1 (MQ=255)

                 cccTTGTGTTGGTATGGCGGTACCCGCGTCTGAACAGTTGACGAACGTCGGCCTGGTGCGGGGCATTAGCATCGCATCAGGCAATCAATAATGTCAGata                                                                                    >  1:2275884/1‑100 (MQ=255)

                   cTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATg                                                                                  <  1:12810/100‑1 (MQ=255)

                    ttGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGa                                                                                 <  1:2918094/100‑1 (MQ=255)

                     tgtgTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGaa                                                                                <  2:2373517/100‑1 (MQ=255)

                     tgtgTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAAATATGaa                                                                                >  1:180586/1‑100 (MQ=255)

                      gtgtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGaaa                                                                               >  1:1483495/1‑100 (MQ=255)

                       tgtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGaaaa                                                                              >  1:3081998/1‑100 (MQ=255)

                       tgtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGaaaa                                                                              >  1:3161917/1‑100 (MQ=255)

                        gtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAg                                                                             >  2:1655439/1‑100 (MQ=255)

                         ttGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGc                                                                            <  1:708002/100‑1 (MQ=255)

                            gTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGa                                                                         >  1:865736/1‑100 (MQ=255)

                             tATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGaa                                                                        <  2:1502833/100‑1 (MQ=255)

                             tATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGaa                                                                        <  1:3345132/100‑1 (MQ=255)

                             tATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGaa                                                                        >  1:357503/1‑100 (MQ=255)

                               tGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAAc                                                                      >  2:1437944/1‑100 (MQ=255)

                               tGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAAc                                                                      <  2:3378724/100‑1 (MQ=255)

                                ggCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACa                                                                     <  2:3274014/100‑1 (MQ=255)

                                ggCTGGACCCGCGCCTGAAAATTTAACGAACGTAGGCCTGATGCGGCGAATTAGAATCGCATCAGGCAATCAATAATGTCAGTTAGGAAAAGCGGa                                                                         <  1:3036382/96‑1 (MQ=255)

                                 gCTGGACCCGCGTCTGATAAGTTAACGAACGTAGGCCTGATGCGGCGGATTAGCATCGCATCAGGCAATCAATACTGTCGGCTATGAACAGCg                                                                           >  1:3546475/1‑93 (MQ=255)

                                    ggACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACataac                                                                 >  1:700983/1‑98 (MQ=255)

                                       cccGCGTCTGAAAAGTTAACGAACGTCGGCCTGATGCAGCGCATTCGCATCGCATCAGGCAATCGATAATGTCAGATAAGAAAAGCGGAAACctat                                                                  >  1:2992646/1‑96 (MQ=255)

                                        ccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATg                                                             <  2:1173483/100‑1 (MQ=255)

                                             tCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGc                                                        >  1:2587795/1‑100 (MQ=255)

                                             tCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGc                                                        >  2:3046195/1‑100 (MQ=255)

                                               tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGa                                                      >  2:2573393/1‑100 (MQ=255)

                                                gAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGAt                                                     <  2:2585525/100‑1 (MQ=255)

                                                 aaaaGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATc                                                    <  2:72881/100‑1 (MQ=255)

                                                  aaaGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCt                                                   <  2:2547345/100‑1 (MQ=255)

                                                   aaGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCtt                                                  <  2:544882/100‑1 (MQ=255)

                                                     gTTAACGAGCGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGAAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGCTCTTaa                                                <  1:1465675/100‑1 (MQ=255)

                                                     gTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTaa                                                >  2:218236/1‑100 (MQ=255)

                                                     gTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTaa                                                <  2:1674988/100‑1 (MQ=255)

                                                       tAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATc                                              >  1:789100/1‑100 (MQ=255)

                                                       tAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATc                                              <  1:1873862/100‑1 (MQ=255)

                                                          cgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCa                                           >  1:2479243/1‑100 (MQ=255)

                                                           gaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAt                                          <  1:1731475/100‑1 (MQ=255)

                                                           gaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAt                                          <  1:2681701/100‑1 (MQ=255)

                                                           gaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAt                                          <  2:3663066/100‑1 (MQ=255)

                                                            aacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCa                                           >  2:3701277/1‑98 (MQ=255)

                                                            aacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAtt                                         >  1:2307496/1‑100 (MQ=255)

                                                             acgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAttt                                        >  1:509243/1‑100 (MQ=255)

                                                             acgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAttt                                        >  2:1738917/1‑100 (MQ=255)

                                                                tAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTa                                     <  2:311857/100‑1 (MQ=255)

                                                                  ggCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtc                                   >  2:895044/1‑100 (MQ=255)

                                                                  ggCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtc                                   <  1:1007249/100‑1 (MQ=255)

                                                                  ggCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtc                                   >  1:1285211/1‑100 (MQ=255)

                                                                    CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtctc                                 >  1:2114073‑M1/1‑100 (MQ=255)

                                                                     ctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATctct                                <  1:3016565‑M2/70‑1 (MQ=255)

                                                                      TGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCtctt                               <  2:368468‑M1/100‑1 (MQ=255)

                                                                       GATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCtcttc                              <  2:2274125‑M1/100‑1 (MQ=255)

                                                                        ATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCtcttct                             >  2:391811‑M1/1‑100 (MQ=255)

                                                                        ATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCtcttct                             >  2:1316176‑M1/1‑100 (MQ=255)

                                                                         TGCGGCGCATTAGGATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAGCTCTTCTg                            >  1:293186‑M1/1‑100 (MQ=255)

                                                                         TGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTg                            <  1:2335528‑M1/100‑1 (MQ=255)

                                                                         TGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTg                            >  2:3067288‑M1/1‑100 (MQ=255)

                                                                             gcgcATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTc                        >  1:1684391/1‑100 (MQ=255)

                                                                              cgcATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTcc                       <  2:2931744/100‑1 (MQ=255)

                                                                              cgcATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTcc                       >  1:1692514/1‑100 (MQ=255)

                                                                                 aTTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGtt                    <  1:157934/100‑1 (MQ=255)

                                                                                   tAGCACCGCATCAGGCAATTAATAATGTCAGATATGAAAAGCGGAAACATATCGATGACAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTa                   <  1:2560395/99‑1 (MQ=255)

                                                                                     gcatcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAAcc                <  2:2894608/100‑1 (MQ=255)

                                                                                     gcatcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAAcc                >  1:1257077/1‑100 (MQ=255)

                                                                                     gcatcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAAcc                >  2:19352/1‑100 (MQ=255)

                                                                                      taatgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAAccc               >  2:70123‑M2/14‑100 (MQ=255)

                                                                                       atcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAAcccc              >  2:61113/1‑100 (MQ=255)

                                                                                        tcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCg             <  1:416799/100‑1 (MQ=255)

                                                                                           catcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATAACGATGGAAGCGATCTTAATCCCATTCTTATCTCTTTTCAGTCCGTTAACCCcgcca          >  1:1171479‑M2/9‑98 (MQ=255)

                                                                                             tcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATc        >  2:13895‑M2/7‑100 (MQ=255)

                                                                                             tcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATc        <  1:3660461‑M2/94‑1 (MQ=255)

                                                                                               aggcAATCAATAATGTCAGATATGAAAAGCGGAGACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTg      <  2:2727885‑M2/96‑1 (MQ=255)

                                                                                                ggcAATCAATAAAGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCg             <  2:2200256‑M2/89‑1 (MQ=255)

                                                                                                  cAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCAt   >  2:1123251‑M2/2‑100 (MQ=255)

                                                                                                  cAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCAt   <  1:1312568‑M2/99‑1 (MQ=255)

                                                                                                   aatcaatAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATcagatcg  >  2:2299953/1‑94 (MQ=255)

                                                                                                   aatcaatAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCAtt  >  1:1959511/1‑100 (MQ=255)

GATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCATT  >  NC_000913/1040480‑1040678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.