| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1571162 = | NA (NA) | 4 (0.030) | 4/164 | NT | 100% | coding (884/1401 nt) | gadB | glutamate decarboxylase B, PLP‑dependent |
| ? | NC_000913 | 1571191 = | 0 (0.000) | coding (855/1401 nt) | gadB | glutamate decarboxylase B, PLP‑dependent | |||||
GGAGAAGTTGATGGCAAAAGTACCAATTTGACCACCCAGGTAGTCAACGTTGAACACCAGTTCCTGCGGCAGCGCTTCTTCGTCACGCCAGATAACCCAGCCGCAGCCCAGCGGAGCCAGACCGAATTTATGGCCTGAAGCACTGATCGATTTCACACGCGGCAGGCGGAAGTCCCAGACGATATCCGGGGCGACGAAC > NC_000913/1571092‑1571290 | ccgcctgccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctg < 2:848273‑M2/1‑1 (MQ=255)ccgcctgccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctg > 1:3524024‑M2/100‑100 (MQ=255)ccgcctgccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctg < 1:230314‑M2/1‑1 (MQ=255)ccgcctgccgcgtgtgaaatcgatcagtgcttcaggccataaatgcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctg < 2:625905‑M2/1‑1 (MQ=255)cagcctgccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctg > 2:3429294‑M2/100‑100 (MQ=255) cgcctgccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctg > 1:173643‑M2/99‑99 (MQ=255) cgcctgccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctGc < 1:3629525‑M2/2‑1 (MQ=255) cgcctgccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctGc > 2:1640043‑M2/99‑100 (MQ=255) cgcctgccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctGc < 2:1353730‑M2/2‑1 (MQ=255) cgcctgccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctGc < 1:1485230‑M2/2‑1 (MQ=255) gcctgccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctGcc < 2:2865209‑M2/3‑1 (MQ=255) cctgccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctGCCg < 1:2499482‑M2/4‑1 (MQ=255) cctgccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctGCCg < 2:3354228‑M2/4‑1 (MQ=255) ctgccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctGCCGc > 1:1239301‑M2/96‑100 (MQ=255) ctgccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctGCCGc < 2:2839109‑M2/5‑1 (MQ=255) tgccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctGCCGCa < 1:3174774‑M2/6‑1 (MQ=255) tgccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctGCCGCa < 2:403871‑M2/6‑1 (MQ=255) tgccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctGCCGCa > 1:3558017‑M2/95‑100 (MQ=255) gccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctGCCGCAg > 1:1437697‑M2/94‑100 (MQ=255) gccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctGCCGCAg < 2:1671092‑M2/7‑1 (MQ=255) gccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctGCCGCAg < 1:2254841‑M2/7‑1 (MQ=255) gccgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgcggggctgcggctgggttatctggcgtgacgacgaagcgctGc > 1:1263307‑M2/94‑95 (MQ=255) gccgcgtgtgaaatcgatcagtgctgcatgccataaattcgggctggctccgctgggcggcgggtgggttatctggcgtgacgaagaagcgctGCCGCAg > 2:2592419‑M2/94‑100 (MQ=255) gccacgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgccgggccgcggctggtttatctggcgtgacgaagaagcgctGCCGc > 1:1071375‑M2/94‑98 (MQ=255) cgcgtgtgaaatcgatcagtgcttcaggccataaattcggtctggctccgctgggctgcggctgggttatctggcgtgacgaagaagcgctGCCGc < 1:1218906‑M2/5‑1 (MQ=255) gggctgcggctgggttatctggcgtgacgaagaagcgctGCCGCAGCCCAGCGGAGCCAGACCGAATTTATGGCCTGAAGCACTGATCGATTTCACAcgc > 1:484944‑M2/40‑100 (MQ=255) ggctgcggctgggttatctggcgtgacgaagaagcgctGCCGCAGCCCAGCGGAGCCAGACCGAATTTATGGCCTGAAGCACTGATCGATTTCACAcgcg > 1:3283502‑M2/39‑100 (MQ=255) gctgcggctgggttatctggcgtgacgaagaagcgctGCCGCAGCCCAGCGGAGCCAGACCGAATTTATGGCCTGAAGCACTGATCGATTTCACACGCgg > 1:83173‑M2/38‑100 (MQ=255) ttatctggcgtgacgaagaagcgctGCCGCAGCCCAGCGGAGCCAGACCGAATTTATGGCCTGAAGCACTGATCGATTTCACACGCGGCAGGCGGAAGTc < 2:3283527‑M2/75‑1 (MQ=255) GCCGCAGCCCAGCGGAGCCAGACCGAATTTATGGCCTGAAGCACTGATCGATTTCACACGCGGCAGGCGGAAGTCCCAGACGATATCCGGGGCGACGAAc > 1:1710262‑M2/1‑100 (MQ=255) | GGAGAAGTTGATGGCAAAAGTACCAATTTGACCACCCAGGTAGTCAACGTTGAACACCAGTTCCTGCGGCAGCGCTTCTTCGTCACGCCAGATAACCCAGCCGCAGCCCAGCGGAGCCAGACCGAATTTATGGCCTGAAGCACTGATCGATTTCACACGCGGCAGGCGGAAGTCCCAGACGATATCCGGGGCGACGAAC > NC_000913/1571092‑1571290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |