| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2729453 = | NA (NA) | 14 (0.120) | 13/158 | NT | 45.4% | intergenic (‑9/+163) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2729475 = | 19 (0.140) | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon | |||||
CCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATC > NC_000913/2729377‑2729574 | ttacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaAt < 1:516807‑M2/2‑1 (MQ=255) acgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaAttt > 2:492287‑M2/97‑100 (MQ=255) cgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaAtttt > 2:116797‑M2/96‑100 (MQ=255) cgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaAtttt > 1:838366‑M2/96‑100 (MQ=255) cgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaAtttt > 1:3002805‑M2/96‑100 (MQ=255) cgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaAtttt > 2:2900312‑M2/96‑100 (MQ=255) cgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgagtgataagcaAtttt > 1:3035291‑M2/96‑100 (MQ=255) gcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTc < 1:515819‑M2/6‑1 (MQ=255) cgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTc > 1:1626343‑M2/94‑99 (MQ=255) cgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCg < 1:3577759‑M2/7‑1 (MQ=255) cgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCg < 2:3187231‑M2/7‑1 (MQ=255) cgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCg < 1:2907005‑M2/7‑1 (MQ=255) cgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCg > 2:3598508‑M2/94‑100 (MQ=255) cgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCg < 1:2730466‑M2/7‑1 (MQ=255) cgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCg > 2:586729‑M2/94‑100 (MQ=255) cgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCg < 1:2519659‑M2/7‑1 (MQ=255) cgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCg < 2:3047201‑M2/7‑1 (MQ=255) cgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCg < 1:739628‑M2/7‑1 (MQ=255) cgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCg < 2:975259‑M2/7‑1 (MQ=255) gttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgt > 2:1759322‑M2/93‑100 (MQ=255) gttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgt > 2:2409422‑M2/93‑100 (MQ=255) ttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaggctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgtg < 1:369285‑M2/9‑1 (MQ=255) ttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgtg < 1:848863‑M2/9‑1 (MQ=255) ttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgtg < 1:2774090‑M2/9‑1 (MQ=255) ttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgtg < 2:3678721‑M2/9‑1 (MQ=255) ttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgtg < 2:635954‑M2/9‑1 (MQ=255) ttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgtg < 1:1888826‑M2/9‑1 (MQ=255) ttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgtg > 2:2241551‑M2/92‑100 (MQ=255) tctggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgtg < 1:3393906‑M2/9‑1 (MQ=255) gggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcacactacacgaaaatatcacgcaacgcgtgataagcaATTTTCgtgt > 2:999855‑M2/90‑99 (MQ=255) ggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTttcgtgaga > 2:3393933‑M2/89‑97 (MQ=255) gatccccTGTTACCGCCGTGAAAGGGCGGTGTCCTTGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAg < 2:3097817/95‑1 (MQ=0) gatccccTGTTACCGACGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAggg < 1:414356/97‑1 (MQ=0) gaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCGTGTAGGGTGa > 2:1349743‑M2/84‑100 (MQ=255) ggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCGTGTAGGGTGAGc > 2:2682551‑M2/82‑100 (MQ=255) ctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaccgcatgataagccAatttcgacatc > 1:3331509‑M2/80‑86 (MQ=255) ggCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGAGATCggaagagcg > 1:1004445/1‑92 (MQ=1) tgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCtt > 2:1730503‑M2/47‑100 (MQ=255) agctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGc > 2:83584‑M2/43‑100 (MQ=255) caccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCa > 2:738569‑M2/39‑100 (MQ=255) accctacacgaaaatatcacgcaacgcgtgataagcaATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCAc > 2:2662621‑M2/38‑100 (MQ=255) cctacacgaaaatatcacgcaacgcgtgataagcaATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTc > 2:967760‑M2/36‑100 (MQ=255) ctacacgaaaatatcacgcaacgcgtgataagcaATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTcc > 2:1282068‑M2/35‑100 (MQ=255) ctacacgaaaatatcacgcaacgcgtgataagcaATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTcc > 1:174370‑M2/35‑100 (MQ=255) acacgaaaatatcacgcaacgcgtgataagcaATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCa > 1:1132804‑M2/33‑100 (MQ=255) cacgaaaatatcacgcaacgcgtgataagcaATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCaa > 1:2786670‑M2/32‑100 (MQ=255) cgaaaatatcacgcaacgcgtgatATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTaa > 1:3005050‑M2/25‑100 (MQ=255) tatcacgcaacgcgtgataagcaATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTaaa > 2:830823‑M2/24‑100 (MQ=255) aaaatatcacgcaacgcgtgatATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAAc > 2:3565277‑M2/23‑100 (MQ=255) gcgTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTAt < 1:2389806/100‑1 (MQ=31) cgTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTAtt < 2:2345332/100‑1 (MQ=32) cgTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTAtt < 2:493511/100‑1 (MQ=32) cgTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTAtt > 1:2672747/1‑100 (MQ=32) nttGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTc > 2:3056187/2‑100 (MQ=17) gTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTc < 1:1040101/100‑1 (MQ=32) gTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTc < 2:1237349/100‑1 (MQ=32) gTTGCGTGATATTTTCGTGTAGGGTGAGCGTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTc < 1:1272933/100‑1 (MQ=17) gTTGCATGATATTTTCTTGTAGGGCCAGCTTTCATTAATACAAAGCGAACGGCCTTATGTTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTc < 1:2540222/100‑1 (MQ=11) ttGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCa < 2:2758026/100‑1 (MQ=32) ttGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCa < 2:2091512/100‑1 (MQ=32) tacGTGATATTTTCGTGTAGGCTGAGCTTTCATTAATAGAAACCGCACCGCCTTATTCTCTTCAGCCTCACTCCCAACCCGTCACCGCCTTGCTATTccc < 1:2780014/98‑3 (MQ=11) tGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCAc > 2:2717952/1‑100 (MQ=33) tGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCAc < 1:719387/100‑1 (MQ=32) gCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACt < 2:1350858/100‑1 (MQ=33) gCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACt > 2:1927411/1‑100 (MQ=33) caggATAGTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCAc < 1:1410179/95‑1 (MQ=12) gTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACttt > 2:3465686/1‑100 (MQ=33) gTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACttt < 2:870031/100‑1 (MQ=33) tGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtttt < 1:3661987/100‑1 (MQ=35) agcaATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtttt < 1:2662606‑M2/96‑1 (MQ=255) gATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc < 1:847107/100‑1 (MQ=35) atatTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtca < 2:3450562/100‑1 (MQ=38) tatTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcat > 2:1015043/1‑100 (MQ=38) ATTTTCGTGTAGGGTTAGCTTTCATTAATAGACACCGAACGGCCTTATTCTCTTCAGCCTCACTCCCATCGCGTAAACGCCTTGCTATTCACTTTtcatc < 1:728636‑M2/100‑1 (MQ=255) ATTTTCGTGTAGGGTGATCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCCACGCGTAAACTCCTTGCTATTCACTTTtcatc < 1:528118‑M2/100‑1 (MQ=255) ATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatc < 2:649516‑M2/100‑1 (MQ=255) ATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatc < 2:2544518‑M2/100‑1 (MQ=255) ATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatc < 2:2692941‑M2/100‑1 (MQ=255) | CCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATC > NC_000913/2729377‑2729574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |