New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3217490NA (NA)9 (0.070) 5/164 NT NA noncoding (57/89 nt) REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 3217522 NA (NA)noncoding (89/89 nt) REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 214 total aligned reads displayed.

GCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTG  >  NC_000913/3217423‑3217621
                                                                                                   |                                                                                                   
gcgGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGC                                                                                                     <  2:205844‑M2/100‑1 (MQ=255)
gcgGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGC                                                                                                     >  1:2730620‑M2/1‑100 (MQ=255)
   gTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCAtt                                                                                                  >  2:238741/1‑100 (MQ=255)
          tGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTcc                                                                                           <  1:3613772/100‑1 (MQ=255)
          tGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTcc                                                                                           <  1:2119799/100‑1 (MQ=255)
          tGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCa                                                                                          <  2:736679/100‑1 (MQ=255)
            ccGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCaa                                                                                         >  2:585779/1‑100 (MQ=255)
               gATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCTAGCATCGCATCAGGCATTGTGCTCCAAccg                                                                                      >  2:1440156/1‑100 (MQ=255)
                aTGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAAccgc                                                                                     >  1:1062933/1‑100 (MQ=255)
                      cGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATc                                                                               >  2:1829482/1‑100 (MQ=255)
                       gCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATcc                                                                              <  2:1950462/100‑1 (MQ=255)
                         ttGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCgg                                                                            <  2:963176/100‑1 (MQ=255)
                         ttGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCgg                                                                            <  2:2036173/100‑1 (MQ=255)
                          tGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACTGCCGGATCCGGc                                                                           <  2:2431199/100‑1 (MQ=255)
                          tGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGc                                                                           >  2:1050910/1‑100 (MQ=255)
                          tGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGc                                                                           <  2:2882378/100‑1 (MQ=255)
                           gACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGAAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCa                                                                          <  1:2007926/100‑1 (MQ=255)
                             cgcgCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATa                                                                        >  2:67442/1‑100 (MQ=255)
                              gcgcCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATAc                                                                       <  2:1070964/100‑1 (MQ=255)
                              gcgcCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATAc                                                                       >  1:1149582/1‑100 (MQ=255)
                               cgcCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATAcc                                                                      <  1:1413876/100‑1 (MQ=255)
                               cgcCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATAcc                                                                      <  1:1983620/100‑1 (MQ=255)
                                   ttATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCCGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGAtt                                                                  <  1:2273847/100‑1 (MQ=255)
                                   ttATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGAtt                                                                  <  1:3281942/100‑1 (MQ=255)
                                   ttAGCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGAt                                                                   <  2:262496/99‑1 (MQ=255)
                                    tATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTa                                                                 >  1:330155/1‑100 (MQ=255)
                                    caTCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTa                                                                 <  1:1864802/99‑1 (MQ=255)
                                     aTCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTaa                                                                <  2:1156976/100‑1 (MQ=255)
                                     aTCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTaa                                                                <  2:3477022/100‑1 (MQ=255)
                                     aTCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTaa                                                                >  2:544356/1‑100 (MQ=255)
                                      tCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAAt                                                               <  2:252277/100‑1 (MQ=255)
                                       ccGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATg                                                              <  1:3671546/100‑1 (MQ=255)
                                       ccGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATg                                                              <  2:1568337/100‑1 (MQ=255)
                                        cGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGc                                                             <  2:3086070/100‑1 (MQ=255)
                                        cGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGc                                                             >  2:1327259/1‑100 (MQ=255)
                                        cGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGc                                                             <  1:3470097/100‑1 (MQ=255)
                                         ggCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCa                                                            >  1:8503/1‑100 (MQ=255)
                                         ggCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCa                                                            >  2:46182/1‑100 (MQ=255)
                                         ggCCTAAACCGGGTGCTCACCCTGCATGCCGGAAACGATGAGCCAACATCCTTTCATGCATACTGGTCCAACCGCCGGATAAGACATACCTATTAAtt                                                              <  1:3012729/98‑2 (MQ=255)
                                          gCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAg                                                           >  2:1346855/1‑100 (MQ=255)
                                           ccTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGt                                                          <  2:2933128/100‑1 (MQ=255)
                                           ccTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGt                                                          >  2:841716/1‑100 (MQ=255)
                                            cTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTa                                                         <  2:1904903/100‑1 (MQ=255)
                                              acacCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTAcc                                                       <  2:850310/100‑1 (MQ=255)
                                              acacCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTAcc                                                       >  1:2944691/1‑100 (MQ=255)
                                              acacCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTAcc                                                       >  1:1368912/1‑100 (MQ=255)
                                               cacCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCACCCGCCGGATCCGGCATACCGATTAATGCAGTACCg                                                      <  1:1261106/100‑1 (MQ=255)
                                               cacCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCg                                                      >  1:3393749/1‑100 (MQ=255)
                                                acCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCCCATCAGGCATTGTCCTCCAACCGCCGGGTCCGGCATACCGATTAATGCAGTAcc                                                       >  1:288831/1‑98 (MQ=255)
                                                 cccGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCg                                                      <  1:2501756/98‑1 (MQ=255)
                                                  ccGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCa                                                   >  1:571152/1‑100 (MQ=255)
                                                   cGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCCTTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCAc                                                  >  1:1006870/1‑100 (MQ=255)
                                                    gCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCAcc                                                 <  2:2728711/100‑1 (MQ=255)
                                                     cTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACcg                                                <  1:2073317/100‑1 (MQ=255)
                                                       acacacCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACcgcg                                              >  1:1514172/1‑100 (MQ=255)
                                                       acacacCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACcgcg                                              <  2:1530132/100‑1 (MQ=255)
                                                          cacCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCt                                           <  1:261353/100‑1 (MQ=255)
                                                             cccGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTcc                                        >  2:423332/1‑100 (MQ=255)
                                                             cccGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTcc                                        <  2:1114454/100‑1 (MQ=255)
                                                                gCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCaat                                     <  2:2489096/100‑3 (MQ=255)
                                                                 cAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTc                                    <  2:1910185/100‑1 (MQ=255)
                                                                 cAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGCACCGTCACCGCGTCTTCCAGTc                                    <  1:2144703/100‑1 (MQ=255)
                                                                  aGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCg                                   <  1:1344034/100‑1 (MQ=255)
                                                                   ggCCTGATAAGATGCGCCAGCATCGCATCAGGCctgcggggtgtgtagcgggtgtaggccggataaggcgcgtcaagcgtcgcctccggcaattgcaccg                                  <  1:3410570‑M2/100‑68 (MQ=255)
                                                                   ggCCTGATAAGATGCGCCAGCATCGCATCAGGCctgcggggtgtgtagcgggtgtaggccggataaggcgcgtcaagcgtcgcatccggcaattgcaccg                                  <  2:1381904‑M2/100‑68 (MQ=255)
                                                                   ggCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCgg                                  >  2:160733/1‑100 (MQ=255)
                                                                    gCCTGATAAGATGCGCCAGCATCGCATCAGGCctgcggggtgtgtagcgggtgtaggccggataaggcgcgtcaagcgtcgcatccggcaattgcaccgc                                 <  2:3279865‑M2/100‑69 (MQ=255)
                                                                    gCCTGATAAGATGCGCCAGCATCGCATCAGGCctgcggggtgtgtagcgggtgtaggccggataaggcgcgtcaagcgtcgcatccggcaattgcaccgc                                 <  1:164074‑M2/100‑69 (MQ=255)
                                                                    gCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGc                                 <  1:627454/100‑1 (MQ=255)
                                                                    gCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGc                                 >  2:386581/1‑100 (MQ=255)
                                                                      cTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTg                               >  2:1391112/1‑100 (MQ=255)
                                                                       tGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTgg                              >  1:2552281/1‑100 (MQ=255)
                                                                       tGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTgg                              >  2:1264530/1‑100 (MQ=255)
                                                                       tGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTgg                              >  2:301988/1‑100 (MQ=255)
                                                                       tGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTAGGCt                                >  1:1396437/1‑98 (MQ=255)
                                                                            aGATGCGCCAGCATCTTATCAGGCctgcggggtgtgtagcgggtgtaggccggataaggcgcgtcaagcgtcgcatccggcaattgcaccgcgccactgg                         <  1:3648646‑M2/100‑77 (MQ=255)
                                                                             gATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGgt                        >  2:890991/1‑100 (MQ=255)
                                                                               tGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGgtgt                      >  2:2305591/1‑100 (MQ=255)
                                                                                gcgcCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGtt                     <  1:1566448/100‑1 (MQ=255)
                                                                                gcgcCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGtt                     >  1:373233/1‑100 (MQ=255)
                                                                                    cAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCAc                 <  2:1635504/100‑1 (MQ=255)
                                                                                      gcatctcatcAGGCATTGTGCTCCAACCGCCTGATCCAGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCTGTGTTTCan                 <  1:1675763/98‑2 (MQ=255)
                                                                                       catcgcatcAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCAt              >  1:2773168/1‑100 (MQ=255)
                                                                                          cgcatcAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGc           >  2:3346089/1‑100 (MQ=255)
                                                                                           ncatcAGGCATTGTGCTCCAACCGCCGGATCCGACATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGcc          >  1:404177/2‑100 (MQ=255)
                                                                                           gcatcAGGCATTGTGCTCCAACCGCCGGATCCGGTATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGcc          >  1:119768/1‑100 (MQ=255)
                                                                                           gcatcAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGcc          <  2:3254178/100‑1 (MQ=255)
                                                                                            catcAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCg         >  2:199788/1‑100 (MQ=255)
                                                                                              tcAGGCctgcggggtgtgtagcgggtgtaggccggataaggcgcgtcaagcgtcgcatccggcaattgcaccgcgccactggcggatgcggcgattaatc       >  2:3613800‑M2/1‑6 (MQ=255)
                                                                                              tcAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGac       >  1:979365/1‑100 (MQ=255)
                                                                                               cAGGCctgcggggtgtgtagcgggtgtaggccggataaggcgcgtcaagcgtcgcatccggcaattgcaccgcgccactggcggatgcggcgattaatcc      <  2:1361975‑M2/100‑96 (MQ=255)
                                                                                               cAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGaca      >  1:3219201/1‑100 (MQ=255)
                                                                                                aGGCctgcggggtgtgtagcgggtgtaggccggataaggcgcgtcaagcgtcgcatccggcaattgcaccgcgccactggcggatgcggcgattaatcca     <  2:285326‑M2/100‑97 (MQ=255)
                                                                                                aGGCctgcggggtgtgtagcgggtgtaggccggataaggcgcgtcaagcgtcgcatccggcaattgcaccgcgccactggcggatgcggcgattaatcca     <  2:2631493‑M2/100‑97 (MQ=255)
                                                                                                 ggCctgcggggtgtgtagcgggtgtaggccggataaggcgcgtcaagcgtcgcatccggcaattgcaccgcgccactggcggctgcggcgattaatccag    <  1:170556‑M2/100‑98 (MQ=255)
                                                                                                 ggCctgcggggtgtgtagcgggtgtaggccggataaggcgcgtcaagcgtcgcatccggcaattgcaccgcgccactggcggatgcggcgattaatccag    >  2:696971‑M2/1‑3 (MQ=255)
                                                                                                 ggCctgcggggtgtgtagcgggtgtaggccggataaggcgcgtcaagcgtcgcatccggcaattgcaccgcgccactggcggatgcggcgattaatccag    <  2:3678994‑M2/100‑98 (MQ=255)
                                                                                                 ggCctgcggggtgtgtagcgggtgtaggccggataaggcgcgtcaagcgtcgcatccggcaattgcaccgcgccactggcggatgcggcgattaatccag    <  2:2656798‑M2/100‑98 (MQ=255)
                                                                                                 ggCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACAcc    <  1:243634/100‑1 (MQ=255)
                                                                                                   cctgcggggtgtgtagcgggtgtaggccggataaggcgcgtcaagcgtcgcatccggcaattgcaccgcgccactggcggatgcggcgattaatccagtt  <  2:3305656‑M2/100‑100 (MQ=255)
                                                                                                   |                                                                                                   
GCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTG  >  NC_000913/3217423‑3217621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.