BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
MC JC	NC_000913	3,815,859	Δ82 bp	100%		[rph]–[rph]	[rph], [rph]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3815859	3815940	82	157 [0]	[1] 159	[rph]–[rph]	[rph], [rph]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3815858	0 (0.000)	124 (1.060)	72/158	NT	100%	pseudogene (24/48 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
*	?	NC_000913	3815941 =	0 (0.000)	124 (1.060)	72/158	NT	100%	pseudogene (609/669 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

Only 100 of 157 total aligned reads displayed.

TGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCA  >  NC_000913/3815760‑3815956

 ggTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGGCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcg                                                                                                  <  1:2795240‑M1/100‑3 (MQ=255)

  gTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgt                                                                                                 >  2:3112661‑M1/1‑97 (MQ=255)

  gTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgt                                                                                                 >  2:425655‑M1/1‑97 (MQ=255)

   tttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtc                                                                                                >  1:885838‑M1/1‑96 (MQ=255)

    ttaatgcCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcc                                                                                               <  1:3280190‑M1/97‑6 (MQ=255)

     tCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccc                                                                                              >  2:3214581‑M1/1‑94 (MQ=255)

      cATGCCTTCGCTCCTCCTCTTACTTTTCTACAGACAAAAAAACGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCCGCGCCGCCTTCTGCcgtcc                                                                                               >  1:2064447‑M1/1‑93 (MQ=255)

      cATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccc                                                                                             <  1:1776747‑M1/100‑8 (MQ=255)

        tGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctg                                                                                           <  2:2274685‑M1/100‑10 (MQ=255)

         gCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgc                                                                                          <  1:1327340‑M1/100‑11 (MQ=255)

         gCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgc                                                                                          >  2:1242980‑M1/1‑90 (MQ=255)

          ccTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgca                                                                                         <  2:959014‑M1/100‑12 (MQ=255)

             tCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactt                                                                                      <  2:601372‑M1/100‑15 (MQ=255)

             tCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactt                                                                                      <  1:1176450‑M1/100‑15 (MQ=255)

               gCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttca                                                                                    >  1:1906195‑M1/1‑84 (MQ=255)

                 tcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaat                                                                                  <  2:1544044‑M1/100‑19 (MQ=255)

                  cctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatg                                                                                 <  2:1957792‑M1/100‑20 (MQ=255)

                     cctctTACTTTTCAACAGACAAAAAAAAGGCAACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatg                                                                              >  2:2489881‑M1/3‑78 (MQ=255)

                      aTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgc                                                                             >  2:1285990‑M1/1‑77 (MQ=255)

                      aTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgc                                                                             >  2:1090000‑M1/1‑77 (MQ=255)

                      aTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgc                                                                             <  2:3328657‑M1/100‑24 (MQ=255)

                      aTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgc                                                                             >  2:616890‑M1/1‑77 (MQ=255)

                       tCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcg                                                                            >  1:3533963‑M1/1‑76 (MQ=255)

                        cTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgc                                                                           <  1:340971‑M1/100‑26 (MQ=255)

                         ttACTTTTCTCAAAACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTCCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcacc                                                                          <  1:2585401‑M1/100‑27 (MQ=255)

                          tACTTTGCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcc                                                                          <  1:3184963‑M1/99‑27 (MQ=255)

                          tACTTTACTACAAACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcc                                                                          <  1:2818887‑M1/99‑27 (MQ=255)

                            cTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgt                                                                       >  1:762741‑M1/1‑71 (MQ=255)

                            cTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgt                                                                       >  1:3181660‑M1/1‑71 (MQ=255)

                            cTTTTATACAAACAAAAAAAAGGCGCCTCATCAGTCGTCTTAAACATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactttagtgatgcgcc                                                                          <  1:302196‑M1/97‑27 (MQ=255)

                               ttCTACAGACAAAAAAAAGGCGACGCATCAGTCGCCTTAAAAATCAGTTTTCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtc                                                                      <  1:3363548‑M1/98‑31 (MQ=255)

                                 cTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                  <  2:2839651‑M1/100‑35 (MQ=255)

                                 cTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                  >  2:2267496‑M1/1‑66 (MQ=255)

                                 cTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                  >  1:937835‑M1/1‑66 (MQ=255)

                                  tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcgg                                                                 <  2:2171697‑M1/100‑36 (MQ=255)

                                  tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcgg                                                                 >  1:604031‑M1/1‑65 (MQ=255)

                                   aCAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggt                                                                <  1:3431547‑M1/100‑37 (MQ=255)

                                   aCAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggt                                                                >  1:1049784‑M1/1‑64 (MQ=255)

                                     aGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtca                                                              <  2:3339705‑M1/100‑39 (MQ=255)

                                       gacaaaaaaaggcGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatc                                                            >  1:3531208‑M1/4‑60 (MQ=255)

                                       aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatc                                                            <  2:896923‑M1/100‑41 (MQ=255)

                                       aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatc                                                            <  1:2907532‑M1/100‑41 (MQ=255)

                                        gatttttaaggcgactGATGAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatca                                                           >  2:2651411‑M1/8‑59 (MQ=255)

                                        cAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgccccctgcacttcaatgatgcgcccgtcttcggtcatca                                                           <  1:1088940‑M1/100‑42 (MQ=255)

                                           aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcacta                                                        <  2:2680422‑M1/100‑45 (MQ=255)

                                            aaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactac                                                       <  2:768227‑M1/100‑46 (MQ=255)

                                            aaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactac                                                       >  2:1994467‑M1/1‑55 (MQ=255)

                                              taagGCGACTGATGAGTCGCCTAAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgt                                                     >  1:2146857‑M1/2‑53 (MQ=255)

                                              aaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCtgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgt                                                     <  2:2111992‑M1/100‑48 (MQ=255)

                                              aaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgt                                                     <  1:2995517‑M1/100‑48 (MQ=255)

                                                aGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc                                                   <  1:3576735‑M1/100‑50 (MQ=255)

                                                 ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttca                                                  <  1:1106572‑M1/100‑51 (MQ=255)

                                                 ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttca                                                  <  1:1504993‑M1/100‑51 (MQ=255)

                                                 ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttca                                                  <  2:3519518‑M1/100‑51 (MQ=255)

                                                   cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatg                                                <  1:3661552‑M1/100‑53 (MQ=255)

                                                   cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatg                                                <  1:2688361‑M1/100‑53 (MQ=255)

                                                   cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatg                                                <  1:1397215‑M1/100‑53 (MQ=255)

                                                    gACTGATGAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgt                                               >  2:1041393‑M1/1‑47 (MQ=255)

                                                    gACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGTCTTCTGCcgtcccctgcacttcaatgatgagcacgtcttcggtcatcactatgttcatgt                                               >  1:3136225‑M1/1‑47 (MQ=255)

                                                      cTCATCGGTCGCCTTAAAAATCAGTTGGCCAGAGCCGCCTTCTGCcgtcccctgcacttcattgatgcgcccgtcttcggtcatcactacgttcatg                                                <  1:2265104‑M1/97‑53 (MQ=255)

                                                      cTCATCAGTCGCCTTAAAAATCAGTTTGCTAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatccgcccgtcttcggtcatcactacgttcatgtcg                                             <  1:2218473‑M1/100‑56 (MQ=255)

                                                      cTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcg                                             >  2:252797‑M1/1‑45 (MQ=255)

                                                      cTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtc                                              <  1:172931‑M1/99‑55 (MQ=255)

                                                       tcatcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgg                                            <  2:1232061‑M1/100‑57 (MQ=255)

                                                       tcatcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgg                                            <  2:3581638‑M1/100‑57 (MQ=255)

                                                       tcatcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgg                                            <  1:469051‑M1/100‑57 (MQ=255)

                                                       tcatcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgg                                            <  1:2876696‑M1/100‑57 (MQ=255)

                                                           caGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctc                                        >  1:1631346‑M1/1‑40 (MQ=255)

                                                             gTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctg                                      >  2:3595098‑M1/1‑38 (MQ=255)

                                                               cGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcg                                    <  2:3531235‑M1/100‑65 (MQ=255)

                                                               cGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcg                                    <  1:2452892‑M1/100‑65 (MQ=255)

                                                                  cTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggca                                 >  1:1798847‑M1/1‑33 (MQ=255)

                                                                   ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcag                                <  2:3657457‑M1/100‑69 (MQ=255)

                                                                   ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcag                                >  2:3571167‑M1/1‑32 (MQ=255)

                                                                    tAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcaga                               <  2:767142‑M1/100‑70 (MQ=255)

                                                                     aaaaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagag                              <  1:1806824‑M1/100‑71 (MQ=255)

                                                                     aaaaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagag                              >  2:1380134‑M1/1‑30 (MQ=255)

                                                                       aaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtc                            >  2:2196055‑M1/1‑28 (MQ=255)

                                                                       aaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtc                            >  1:652666‑M1/1‑28 (MQ=255)

                                                                         gatcttttgccagCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctt                          <  1:420820‑M1/95‑75 (MQ=255)

                                                                            aGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaa                       >  2:3170796‑M1/1‑23 (MQ=255)

                                                                             gTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcgatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaac                      >  1:1965317‑M1/1‑22 (MQ=255)

                                                                             gTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaac                      <  1:3673340‑M1/100‑79 (MQ=255)

                                                                              tttGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacg                     <  1:1782139‑M1/100‑80 (MQ=255)

                                                                                 gCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtat                  >  1:3054396‑M1/1‑18 (MQ=255)

                                                                                 gCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtat                  >  2:376766‑M1/1‑18 (MQ=255)

                                                                                   cAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattc                >  2:2095342‑M1/1‑16 (MQ=255)

                                                                                   cAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattc                >  2:3270770‑M1/1‑16 (MQ=255)

                                                                                        ccgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagat           <  1:3206033‑M1/100‑90 (MQ=255)

                                                                                        ccgccTTCTGCcgtcccctgcacttcaatgatccgcccgactacggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagat           <  1:2601985‑M1/100‑90 (MQ=255)

                                                                                         cgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatc          <  1:3074706‑M1/100‑91 (MQ=255)

                                                                                         cgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatc          <  2:1834155‑M1/100‑91 (MQ=255)

                                                                                           ccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgc        >  1:1996870‑M1/1‑8 (MQ=255)

                                                                                           ccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgc        >  2:2330833‑M1/1‑8 (MQ=255)

                                                                                            cTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgca       >  2:3270552‑M1/1‑7 (MQ=255)

                                                                                               cTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaac    >  2:259928‑M1/1‑4 (MQ=255)

                                                                                               cTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaac    <  2:1842324‑M1/100‑97 (MQ=255)

                                                                                                tGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaac    >  2:865082‑M1/1‑3 (MQ=255)

                                                                                                 gCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccg  >  2:1438556‑M1/1‑2 (MQ=255)

                                                                                                 gCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccg  >  1:2436633‑M1/1‑2 (MQ=255)

TGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCA  >  NC_000913/3815760‑3815956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`