| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,985 | T→C | 28.6% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,985 | 0 | T | C | 28.6% | 448.7 / 207.1 | 257 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (92/91); new base C (69/4); total (161/96) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.59e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.04e-03 | |||||||||||
Only 100 of 261 total aligned reads displayed.
TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705886‑3706084 | tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt > 1:70557/1‑100 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 2:2924243/1‑100 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGACGTTAACGCCTTa > 1:605633/1‑100 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc < 1:2080456/100‑1 (MQ=255) gcCGGACGGCGCTGCCCGCAGAGGCACAGCGCCACCGGGTATACAGACTGTTGACACAGTGCGCTTCGTTCCTGCCGGATGCGGCGTTAACGCCTTATcc < 1:2712024/100‑1 (MQ=37) ccGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg > 2:3311636/1‑100 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 1:3058352/1‑98 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg > 1:2863805/1‑100 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGGCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc < 2:677890/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:2483789/100‑1 (MQ=255) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTa > 1:1392216/1‑100 (MQ=255) ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCATaa < 2:1912245/100‑2 (MQ=25) cctgtaggaagagGCGCAGTGCCACCGGGTATACAGATTGCTGACAAAGTGAGCTCTGATTATGCCCGATGCGTCGTTGACGCCTTATCCGGCCTAc > 1:1775629/10‑97 (MQ=17) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAt < 2:2583514/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 1:3311611/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 2:2370937/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 2:2634915/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 2:2055967/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 1:2677849/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:3608290/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 2:1528133/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 1:2930836/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 1:903891/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 2:1215504/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTCGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc > 1:3240987/1‑99 (MQ=255) caGCGCCACCGTGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACTCCTTATCCGGCCTAC‑AAAATCCTGCAAATTCAAt < 1:808522/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 2:1107637/100‑1 (MQ=255) aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCTCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 1:767953/99‑1 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc > 2:504571/1‑100 (MQ=255) gcCACCGAGTATGCAGATTGTTGACAAAGTGCTCTTTGTGTATGCCCGATGCGGCGTTAACGCCTTAGCAGGCCTAC‑AAGCTCGTGCAAATTCAAt < 1:1725959/96‑1 (MQ=17) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 1:2629182/1‑100 (MQ=255) aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc < 2:1392222/100‑1 (MQ=255) aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc < 1:316794/100‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑g < 1:3509354/100‑1 (MQ=255) tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑At‑t > 1:1992360/1‑100 (MQ=255) tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑At‑t > 1:3164643/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑g < 1:2975994/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑g > 2:3229543/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑g < 2:410958/100‑1 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑Gt < 2:3275461/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGcc > 2:1344721/1‑100 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGcc < 1:1002677/100‑1 (MQ=255) ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCt < 1:2213313/100‑1 (MQ=255) tgACAAAGTGAACTTTGTTTATGCCGGATGCGGCATTAACGCCTTATCCGGCCTAC‑AAAATCGTGAAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAgcc > 1:1433280/1‑95 (MQ=17) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATa > 1:1070408/1‑100 (MQ=255) cAAAGTGCGCTTGGTTTATGCCGGATGCGGCGTTCACGTCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATa < 2:74374/100‑1 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCgg < 1:2655214/100‑1 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGa < 2:2290456/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgc > 2:2311046/1‑100 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgcg < 2:2237953/100‑1 (MQ=255) atttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑‑ATCC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCAt > 2:1236679/9‑100 (MQ=18) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg > 2:3065013/1‑100 (MQ=255) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGAT‑CG‑‑AT‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:115973/5‑100 (MQ=21) taggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTGC‑‑‑A‑‑AT‑T‑‑‑CTCTTGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:3142398/4‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑‑AC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:1631766/4‑100 (MQ=18) ctggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑A‑‑AT‑TCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAg < 1:1322762/97‑1 (MQ=21) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑‑AA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2006942/3‑100 (MQ=18) aggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑‑AA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1627716/3‑100 (MQ=18) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:3435657/1‑100 (MQ=255) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGCA‑ATTCAA‑C‑‑‑TT‑‑‑GTAGGCCTGATAAGCGCAGCGCATCAgag > 2:1322768/2‑98 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GT‑‑TT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa > 2:1118406/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGCA‑AT‑‑CT‑C‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1641664/2‑99 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGCA‑GG‑‑AA‑A‑‑‑CAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGCa > 1:3572448/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGCA‑GG‑‑GA‑C‑‑‑TAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCa > 1:1164148/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GAG‑AT‑T‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2084962/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GA‑‑GA‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2442943/2‑100 (MQ=17) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑GT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:2602012/1‑100 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑‑ATCC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 2:365000/1‑100 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTGC‑‑‑A‑‑AT‑T‑‑‑CTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGctg > 2:350184/1‑98 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTGC‑‑‑A‑‑AT‑T‑‑‑CTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGctg > 1:2134425/1‑98 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGCA‑TG‑‑GG‑C‑‑‑CAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:913008/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑A‑‑AT‑C‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:2106601/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GG‑‑AG‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 2:2698085/1‑100 (MQ=21) ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGCATGG‑‑GC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:2789724/9‑98 (MQ=17) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CC‑‑AT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:2334547/9‑98 (MQ=21) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GG‑‑AG‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAttt > 2:1014758/9‑100 (MQ=21) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:3079328/1‑100 (MQ=255) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑‑GT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1898626/7‑100 (MQ=17) ggataaggcgTTTACGCAGCATCCGGCCTAC‑AAAAGCATGCAAATTCGATATATTGCA‑GA‑‑GT‑T‑‑‑CAC‑‑GTAAGCCTGATAAGCGTAGCGCATAAGGCAgtt > 1:547477/7‑99 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GT‑‑TT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 2:1478204/7‑96 (MQ=25) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GT‑‑TT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 1:3622922/7‑96 (MQ=25) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GA‑‑GA‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 2:64034/7‑100 (MQ=17) gataaggcgTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTGTG‑GG‑‑CT‑C‑‑‑GAC‑‑GTAGGCCTGATAAGCATAGAGCATCAAGCActttt > 1:1583303/6‑100 (MQ=18) gataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGCA‑GG‑‑AA‑A‑‑‑CAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGCAgtttt > 1:1604488/6‑100 (MQ=18) gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:970168/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAATTTAAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAATCATGATAAGCGGAGTGAATCAGGCATTcttgcct > 1:2553076/1‑100 (MQ=18) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:3470182/1‑100 (MQ=255) ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt > 2:2744096/1‑100 (MQ=255) ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt > 1:3435918/1‑100 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 1:3014201/100‑1 (MQ=255) ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 2:851893/100‑1 (MQ=255) ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 2:359905/100‑1 (MQ=255) tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 1:2484278/1‑100 (MQ=255) aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc > 1:2959480/1‑100 (MQ=255) aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc > 1:1243904/1‑100 (MQ=255) cGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa > 1:3139547/1‑100 (MQ=255) cGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa > 1:1510079/1‑100 (MQ=255) cGCCGTATCCGGCCTAC‑AAAATCGTGCAAATTCAAGACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 1:1051884/99‑1 (MQ=255) ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 2:1741140/1‑100 (MQ=255) tATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCtt > 2:1867324/1‑100 (MQ=255) | TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705886‑3706084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |