| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,971 | 0 | C | A | 32.4% | 353.1 / 169.8 | 174 | intergenic (‑181/+127) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base C (55/62); new base A (55/1); total (110/64) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.99e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.78e-01 | |||||||||||
Only 100 of 194 total aligned reads displayed.
AGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCT > NC_000913/3705872‑3706070 | gggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcg > 1:882851/1‑100 (MQ=255) gggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcg > 2:2100323/1‑100 (MQ=255) gAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcggc < 1:17152/100‑1 (MQ=255) aaTGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcggcg < 2:1454568/100‑1 (MQ=255) aaTGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcggcg < 1:683144/100‑1 (MQ=255) gAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTa > 1:1339460/1‑100 (MQ=255) aGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAAc < 2:2140717/100‑1 (MQ=255) aGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAAc < 2:311697/100‑1 (MQ=255) gTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACg < 2:289918/100‑1 (MQ=255) gTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACg < 2:315506/100‑1 (MQ=255) gTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACg < 2:1015691/100‑1 (MQ=255) gTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACg < 1:2051671/100‑1 (MQ=255) tATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGc < 1:2114297/100‑1 (MQ=255) ttGCTGCCGGATGGCGCTGCACTCAGAGGCATAGCGCAACCGGGTATGCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 2:1815522/100‑1 (MQ=25) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa < 1:2344847/100‑1 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 2:2097635/1‑100 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc < 2:820389/100‑1 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc > 1:2556911/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 1:585786/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATCGTTGGCAAAGTGCGCTTGGTTTATGGCGGATGCGGCGTTAACGCCTTATcc > 1:2670016/1‑100 (MQ=38) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc < 1:615716/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:420374/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:493235/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGACACCGGGTATACAGATTGTTGACAAAGTTCGCTTTGGTAATGCCGGATGCGGCGTTAACGCCTTATCTGGcc < 2:1847177/100‑1 (MQ=25) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt > 2:2008516/1‑100 (MQ=255) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTa > 2:190783/1‑100 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAt < 2:2599334/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 2:864305/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg > 1:2066111/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 1:124436/100‑1 (MQ=255) aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGt > 1:1498795/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 2:694109/1‑100 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:1138033/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 2:82250/1‑100 (MQ=255) acaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCaa < 2:2084213/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 1:553954/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 1:507398/100‑1 (MQ=255) cgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACa < 2:2052442/100‑1 (MQ=255) cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTg < 1:1844156/100‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑g < 2:1280292/100‑1 (MQ=255) ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑Gaa > 1:183095/1‑100 (MQ=255) tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAt‑t > 1:1109192/1‑100 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAt‑t‑tt > 1:805162/1‑100 (MQ=255) aCAGATTGTTCACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑ACAACCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTc < 2:1763744/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑g < 2:851077/100‑1 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑Gt < 2:1131628/100‑1 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTa > 1:2010883/1‑100 (MQ=255) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGc < 1:405598/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGcc > 2:1971319/1‑100 (MQ=255) ataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGcc > 2:1094990/5‑100 (MQ=18) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGa > 2:31022/1‑100 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGc > 2:2489389/1‑100 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTACAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCg > 1:1612443/1‑100 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGa > 2:344978/1‑100 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAgc < 1:2240114/100‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAgcg > 1:387968/1‑100 (MQ=255) ttttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGC‑‑A‑CCAT‑C‑CTC‑‑GTAGGCCTGAAAAGCGTAGCGCa > 1:953076/9‑100 (MQ=18) atttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑‑GAAT‑CCCTT‑‑GTAGGCCTGATAAGCGTAGCGCAt > 1:1042829/9‑100 (MQ=18) tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAggcgttaacgc > 1:2580581/1‑90 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa > 2:1672036/1‑100 (MQ=255) tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGC‑‑A‑GTTT‑A‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCa > 1:526289/6‑100 (MQ=21) tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑‑A‑GGAG‑C‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 1:1166698/6‑100 (MQ=17) tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑‑A‑GGAG‑C‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 1:868749/6‑100 (MQ=18) tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGC‑‑A‑GGAG‑T‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:1755779/6‑100 (MQ=21) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 1:31022/100‑1 (MQ=255) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 1:1881540/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGC‑‑ATGGGC‑C‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:1198668/5‑100 (MQ=17) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGC‑‑A‑GTTT‑A‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAg > 2:921123/5‑100 (MQ=25) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑A‑ATCT‑C‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:2404439/5‑100 (MQ=18) taggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGC‑‑A‑GAAA‑C‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:2386912/4‑100 (MQ=18) taggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg > 1:1320791/4‑100 (MQ=17) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AGAATCGTGCAAATTCAATACTTTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg < 2:1469505/100‑1 (MQ=255) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg > 1:1071859/1‑100 (MQ=255) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg < 1:2439469/100‑1 (MQ=255) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGC‑‑A‑GAAA‑C‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:576354/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGC‑‑A‑TGAG‑C‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1376546/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGC‑‑A‑GTTT‑A‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:688363/3‑100 (MQ=25) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGC‑‑A‑CCAT‑C‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2572293/3‑100 (MQ=21) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:2167021/1‑100 (MQ=255) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑‑GAATCC‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 1:1940315/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGC‑‑A‑GGAC‑C‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1954521/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGC‑‑A‑GGAC‑C‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:325878/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGACTTTGCAAATTCAATATATTGC‑‑‑‑‑AAT‑C‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1438086/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGC‑‑A‑GTTT‑A‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa > 1:1668125/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑‑‑AAT‑C‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:921400/2‑100 (MQ=18) gCCGGATGCGGCGTTAACGCGTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:1645094/1‑100 (MQ=255) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:741864/1‑100 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTGC‑‑‑‑‑AAT‑T‑CTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGctg > 1:1466579/1‑98 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGC‑‑A‑TGAG‑C‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:1116062/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGC‑‑A‑TGAG‑C‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:1994576/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGC‑‑A‑CCAT‑C‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:347873/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑‑A‑GGAG‑C‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:1172635/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAACCGCGCAAATTCAATATATTGCGGA‑GAAA‑A‑T‑‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAgactgt > 1:2604508/1‑95 (MQ=21) gCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:2433657/1‑100 (MQ=18) gCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:710897/1‑100 (MQ=18) gATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt < 2:434665/100‑1 (MQ=255) gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:2066089/98‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:2501635/1‑100 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:449169/1‑100 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct < 1:1046350/100‑1 (MQ=255) | AGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCT > NC_000913/3705872‑3706070 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |