| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,984 | 0 | T | G | 39.5% | 279.1 / 305.1 | 218 | intergenic (‑194/+114) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (70/62); new base G (85/1); total (155/63) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.92e-16 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.66e-01 | |||||||||||
Only 100 of 224 total aligned reads displayed.
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083 | ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 2:1273527/100‑1 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 2:569570/1‑100 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa < 1:2344847/100‑1 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATCGTTGGCAAAGTGCGCTTGGTTTATGGCGGATGCGGCGTTAACGCCTTATcc > 1:2670016/1‑100 (MQ=38) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:420374/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:2095237/100‑1 (MQ=255) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTa > 2:190783/1‑100 (MQ=255) cTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaaa > 2:1046342/1‑100 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAt < 2:2599334/100‑1 (MQ=255) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATc > 2:1097057/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg > 1:2066111/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 2:864305/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 1:124436/100‑1 (MQ=255) aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGTGGCGTTAATGCCTTATCCGGCCTAC‑AAAATCGt < 1:2120097/100‑1 (MQ=255) aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGt > 1:1498795/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 2:694109/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 2:1776896/1‑100 (MQ=255) gagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCaaa > 1:602103/1‑100 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 2:1465551/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 2:82250/1‑100 (MQ=255) ccGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑a < 1:639729/100‑1 (MQ=255) ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑Ga‑a > 1:183095/1‑100 (MQ=255) tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑At‑t > 1:1109192/1‑100 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑At‑ttt > 1:805162/1‑100 (MQ=255) aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTc > 1:171554/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑g < 2:851077/100‑1 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑Gt < 2:1661503/100‑1 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTa > 1:2010883/1‑100 (MQ=255) tcatcagcAAAGAGCACTTTGTTTGCGCCGAATGACGCGTTAACGCCTTATCCGTCCAAG‑AAAGCGGGGCAACTTTAATACATTGC‑‑T‑GG‑AG‑TATC‑‑GTAgg > 2:79388/8‑100 (MQ=255) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGc < 1:405598/100‑1 (MQ=255) cataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGc > 1:1967971/6‑100 (MQ=18) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGcc > 2:1971319/1‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGa > 2:31022/1‑100 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTACAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCg > 1:1612443/1‑100 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCgg > 2:2026162/1‑100 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGa < 2:333444/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgc < 1:1467010/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgc < 2:1306072/100‑1 (MQ=255) tgatttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGC‑‑A‑GG‑AG‑TTAT‑‑GTAGGCCTGATAAGCGTAgcgc > 1:1908801/11‑100 (MQ=18) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgcg > 1:387968/1‑100 (MQ=255) ttttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGC‑‑A‑CC‑AT‑CCTC‑‑GTAGGCCTGAAAAGCGTAGCGCa > 1:953076/9‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGC‑‑A‑CC‑AT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATc > 2:2060565/7‑100 (MQ=21) tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGC‑‑A‑GT‑TT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCa > 1:526289/6‑100 (MQ=21) tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑‑A‑GG‑AG‑CTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 1:868749/6‑100 (MQ=18) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 1:31022/100‑1 (MQ=255) gtgggtcGGATAAGGCGTTCACGCCGCATCCGGCCCAC‑AAAGTCTTGCAAAATCAATAAATTGC‑‑AGGA‑AC‑GAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:121162/7‑100 (MQ=18) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTGC‑‑A‑AT‑TC‑TCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:1755627/5‑99 (MQ=18) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGC‑‑ATGG‑GC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:1198668/5‑100 (MQ=17) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑‑A‑GG‑AG‑CTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:2076139/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑A‑AT‑CT‑CCGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:2404439/5‑100 (MQ=18) taggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGC‑‑A‑GA‑AA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:2386912/4‑100 (MQ=18) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg > 1:1071859/1‑100 (MQ=255) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGC‑‑A‑GA‑AA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:576354/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGC‑‑A‑TG‑AG‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1376546/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGC‑‑A‑GT‑TT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:688363/3‑100 (MQ=25) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGC‑‑A‑CC‑AT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2572293/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTGC‑‑A‑GA‑GA‑TCAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1321490/3‑100 (MQ=14) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGC‑‑A‑GG‑AA‑ACAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGc > 2:1634636/3‑100 (MQ=18) aggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GC‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:490034/3‑100 (MQ=17) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:2167021/1‑100 (MQ=255) ggtcggataaggcgTTCACGCCGCATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTGC‑‑AGGA‑AC‑GAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2277393/11‑100 (MQ=21) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 1:1940315/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGC‑‑ATGG‑GC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:350834/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGC‑‑A‑GG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:325366/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGACTTTGCAAATTCAATATATTGC‑‑‑‑‑A‑AT‑CTCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1438086/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGC‑‑A‑GT‑TT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa > 1:1668125/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGC‑‑A‑GG‑GA‑CTAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCa > 1:1782546/2‑100 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGC‑‑A‑TG‑AG‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:1994576/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGC‑‑A‑TG‑AG‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:1116062/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAACCGCGCAAATTCAATATATTGCGGA‑GA‑AA‑AT‑‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAgactgt > 1:2604508/1‑95 (MQ=21) gCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:2433657/1‑100 (MQ=18) ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGC‑‑A‑GA‑GT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:2540327/9‑98 (MQ=17) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGC‑‑A‑CC‑AT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:738360/9‑98 (MQ=21) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGC‑‑A‑GAGAT‑TAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:2213894/9‑98 (MQ=17) cGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttt > 1:187123/1‑100 (MQ=255) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 1:1159360/7‑98 (MQ=21) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGC‑‑A‑GA‑GT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:506341/7‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTGC‑‑A‑AT‑CT‑TCTG‑‑GTAGGCCTGATAAGCATCGCGCATCAGGCaagct > 1:2451141/7‑96 (MQ=21) ggataaggcgTTCACGCCGCATCCTGCCTAC‑AAAAGCACGCAAATTCAATATATTGC‑‑A‑GA‑GA‑TGGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttt > 1:2557327/7‑100 (MQ=14) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGA‑‑T‑CG‑AT‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1002661/7‑100 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGC‑‑A‑CC‑AT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaattc > 1:99822/7‑96 (MQ=21) ggataaggcgTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt > 2:1854519/7‑100 (MQ=18) gataaggcgTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGC‑‑A‑GG‑AG‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttatg > 1:553035/6‑97 (MQ=21) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg > 2:1138951/1‑100 (MQ=255) taaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgcgcc > 1:226536/4‑95 (MQ=21) taaggcgTTCACGCCGCATCCTGCCTAC‑AAAAGCACGCAAATTCAATATATTGC‑‑A‑GA‑GA‑TGGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCATTtttgc > 1:559345/4‑100 (MQ=14) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct < 1:1046350/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:449169/1‑100 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:2501635/1‑100 (MQ=255) ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt > 2:2454022/1‑100 (MQ=255) gcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgccttt > 2:345926/1‑100 (MQ=255) gatctcGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:1706598/95‑1 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:2556884/100‑1 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:2259897/100‑1 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:882843/100‑1 (MQ=255) ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 2:2222702/100‑1 (MQ=255) aaCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAATTTTGCCTTTGCCAt > 1:2655377/1‑100 (MQ=255) aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:2166999/100‑1 (MQ=255) aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:1498781/100‑1 (MQ=255) gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg > 2:2477066/1‑100 (MQ=255) | TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |