| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4266888 = | NA (NA) | 6 (0.050) | 6/164 | NT | NA | noncoding (1/97 nt) | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 4266918 = | NA (NA) | noncoding (31/97 nt) | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
CGTACATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4266993‑4266888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGT > NC_000913/4266918‑4267015 CGTACATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCA > 1:2735278/1‑100CGTACATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCA > 1:949187/1‑100 CATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCG > 2:2646993/1‑100 nTCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGG > 2:950391/2‑100 ATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGG > 2:478990/1‑100 TCCGCCAGAGGCACGTCCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGC < 2:3372427/100‑1 TCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGC > 1:3225811/1‑100 TCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGC > 2:479404/1‑100 TCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACACCGCATCCGGC > 2:543623/1‑100 ATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTT > 2:3167783/1‑100 ATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGC > 1:468578/1‑99 TTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCT > 2:2208247/1‑99 TGGCCGGATAAGGCATTCACGCCGCATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCG > 1:3312601/1‑100 GGCCGGATAAGGCATTCACGCCGCATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGG > 1:320484/1‑100 GCCGGATAAGGCATTCACGCCGCATCCGGCCAATAAAATCCTAAAAATTCAATCAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGC > 1:220586/1‑97 ccgatctCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTC < 2:953473/93‑1 ATCCGGCCAATAAAATCCTAAAAATTCAATATGTTGATGTTCTTTCATTCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCAC < 1:1192290/100‑1 ATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTTGCGGATGTACGTTTGTCATGAGTCTCAC > 1:2946551/1‑100 ATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCAC < 1:1052384/100‑1 TCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACT > 1:929626/1‑100 TCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACT > 1:844077/1‑100 CCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGTATGTACGTTTGTCATGAGTCTCACTC > 1:1243310/1‑100 CCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTC > 2:822868/1‑100 CGGCCAATAAAATGCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTC < 1:2329531/99‑1 CGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCagatcgg > 1:953471/1‑93 CGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCT < 1:1055621/100‑1 GCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGT < 2:600044/100‑1 CGTACATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4266993‑4266888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGT > NC_000913/4266918‑4267015 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |