| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4415962 = | NA (NA) | 7 (0.060) | 5/166 | NT | NA | noncoding (5/34 nt) | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 4415992 = | NA (NA) | intergenic (+92/+25) | aidB/yjfN | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase/DUF1471 family periplasmic protein | |||||
AAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4416066‑4415962‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTACC > NC_000913/4415992‑4416090 AAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGT > 2:3338020/1‑100 AGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTC > 1:3105593/1‑100 CCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGG > 2:548210/1‑100 CCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGG < 2:2279077/100‑1 CCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGG < 2:1418114/100‑1 CAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGGGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGC < 2:1115973/100‑1 CAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGC < 2:3070791/100‑1 CAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGC > 2:792784/1‑100 ATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATC > 2:673511/1‑100 ATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATC > 1:1429693/1‑100 CAATGCCGGATGCGGCGCGAGCGCATTGTCCGGCATTGTTCATGTGCTGTAGATGACACTCATGCATACAGTATCGCGTGTCCGCGCCAGTTATCAGGC > 1:2356932/1‑99 AATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTG > 2:3058916/1‑100 ATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCGTGTACGCGCCAGTTATCAGGCTG > 1:1034772/1‑99 ATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTG > 2:782360/1‑99 TGCCGGATGCGGCGCGAGCGCCTTGTCCGACATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCT > 1:1792174/1‑100 TCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCG < 1:52196/100‑1 TCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCG < 1:2198406/100‑1 TCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCG > 2:2207124/1‑100 TCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCG < 1:1356849/100‑1 CCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGG < 1:242964/100‑1 CCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGG < 2:1939208/100‑1 CGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGc < 1:2153211/99‑2 CGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGT > 2:86991/1‑100 CGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGT > 1:533978/1‑100 GGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTA > 1:1201958/1‑100 CATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTACC < 1:616674/100‑1 AAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4416066‑4415962‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTACC > NC_000913/4415992‑4416090 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |