| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4638146 | 108 (0.880) | 9 (0.080) | 8/156 | NT | 7.7% | intergenic (+26/‑32) | creC/creD | sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein |
| ? | NC_000913 | = 4638170 | 122 (1.130) | intergenic (+50/‑8) | creC/creD | sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
TGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4638038‑4638146‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatagtcttcTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTTCC < NC_000913/4638170‑4638072 TGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCAC > 2:1875816/1‑100 GTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACA > 1:1080953/1‑100 GTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACA > 1:1081070/1‑100 GTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACA > 2:3257130/1‑100 TTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACAT < 1:1531947/100‑1 TTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACAT > 1:1750695/1‑100 TTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACAT < 1:2326135/100‑1 TTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATA > 1:477638/1‑100 TTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATA > 2:1466256/1‑100 TTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATA > 1:2348853/1‑100 TTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATA > 1:142919/1‑100 TTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATA > 1:139847/1‑100 AACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGT < 1:286506/100‑1 AACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGT < 2:24853/100‑1 ACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTC > 1:99819/1‑100 CGGTGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGGCACTTCACATAGCTTCAAATTCTTCCCACATAGT > 1:2899669/1‑98 CGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCT > 1:2806963/1‑100 GGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTT < 1:1490198/100‑1 GGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTT > 2:2189696/1‑100 GGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTT > 1:849661/1‑100 GGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTT > 1:3281176/1‑100 GCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTC < 1:1060030/100‑1 CGTGCTGGCCTCGCTTCGCCTTCAGCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATG < 2:3002544/100‑1 GTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGT < 1:762107/100‑1 TGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTG < 2:1910235/100‑1 TGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATGCTT‑CCACATAGTCTTCTCCTGTGCAATGGCAGCAGGATACGAAGACTATGTGG < 1:2991003/100‑1 GCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGG < 2:616385/100‑1 CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGG < 2:3414700/100‑1 TGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGA < 1:2760539/100‑1 GGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAA < 2:2205308/100‑1 CGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATT < 1:1466250/100‑1 ACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCAC < 1:2238920/100‑1 AGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCA < 1:2795642/100‑1 GTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCAC < 2:2691641/100‑1 CTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCT < 2:1343903/100‑1 TTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTT > 2:2939995/1‑100 TTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTT > 2:3177402/1‑100 CTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTTCC < 2:3252542/100‑1 TGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4638038‑4638146‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatagtcttcTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTTCC < NC_000913/4638170‑4638072 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |