| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 632119 = | NA (NA) | 4 (0.040) | 6/164 | NT | NA | noncoding (5/34 nt) | REP55 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP55 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 632149 = | NA (NA) | intergenic (+150/‑33) | cstA/ybdD | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein | |||||
CCTGACCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/632224‑632119‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATG > NC_000913/632149‑632247 CCTGACCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTA > 2:754534/1‑100 GACCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCC > 2:400150/1‑100 GACCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCC > 2:1347259/1‑100 GACCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCC > 1:3281197/1‑100 ACCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCG > 2:1870610/1‑100 CCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTCTCCGG > 2:981242/1‑100 CCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGG < 1:1407640/100‑1 CCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGG < 2:1662505/100‑1 CCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGG < 1:3302082/100‑1 CCTAAATATTTTCCGGCTGTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTAACCGG < 2:123282/100‑1 CTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGGC < 2:1090078/100‑1 CTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATAAGGCGTTCACGCCGCATCCGGC < 1:1142465/100‑1 ATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATAAGGCGTTCACGCCGCATCCGGCACTC < 1:2936381/100‑1 GCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGG > 2:1485978/1‑100 CTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGA > 1:3192453/1‑100 AAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAA > 1:1728047/1‑100 GTGCCGGATGCGGCGTGAACGCCTTATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTT > 2:1548723/1‑100 TCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTG < 2:3283587/100‑1 CGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGT > 1:3117221/1‑100 CGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGT > 2:775351/1‑100 GGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTA < 1:2642175/100‑1 GGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTA < 1:405983/100‑1 GGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTA < 1:405939/100‑1 GGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTA > 1:1675979/1‑100 GGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTAACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTA > 1:2920430/1‑100 GGCACTCTTGCAGCAACATGGTTAGCGGAGGCCAAGATGTGTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTA < 1:2742823/100‑1 GCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTAT < 1:2379134/100‑1 GCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTAT > 2:815811/1‑100 CACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATG > 1:72560/1‑100 CACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATG > 1:2169855/1‑100 CCTGACCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/632224‑632119‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATG > NC_000913/632149‑632247 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |