| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1665135 | NA (NA) | 3 (0.030) | 3/156 | NT | NA | intergenic (+15/‑180) | dmsD/clcB | twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter |
| ? | NC_000913 | = 1665166 | NA (NA) | noncoding (31/31 nt) | REP125 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP125 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
CACTGGGTGAACTGGCTCGCTTAACGCTGGCGCAATGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1665035‑1665135‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattGCCGGATTGCGCGTAATCGTCACCATCCGGCAATATTACGGTGATCCTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCCATTGCGCCAG < NC_000913/1665166‑1665061 CACTGGGTGAACTGGCTCGCTTAACGCTGGCGCAATGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATAT > 2:1227444/1‑100CACTGGGCGAACTGGCGCGCTTAACGCTGGCGCAATGGCAATCACAACCGGTAATTCCTGTCGCGGCTAAACCCCTGGTTCGATAGGATCACCGTAATAT > 1:639503/1‑100 ACTGGGTGAACTGGCTCGCTTAACGCTGGCGCAATGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATT > 2:656785/1‑100 ACTGGGTGAACTGGCTCGCTTAACGCTGGCGCAATGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATT > 1:476841/1‑100 CTGGGTGAACTGGCTCGCTTAACGCTGGCGCAATGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTG > 2:3280677/1‑100 GGGTGAACTGGCTCGCTTAACGCTGGCGCAATGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCC < 2:337165/100‑1 GGTGAACTGGCTCGCTTAACGCTGGCGCAATGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCG < 2:3001037/100‑1 GGTGAACTGGCTCGCTTAACGCTGGCGCAATGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCG < 2:13946/100‑1 GGTGAACTGGCTCGCTTAACGCTGGCACAATGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCG < 1:2317228/100‑1 GTGAACTGGCTCGCTTAACGCTGGCGCAATGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGG < 2:973778/100‑1 GTGAACTGGCTCGCTTAACGCTGGCGCAATGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGG < 2:652109/100‑1 GTGAACTGGCTCGCTTAACGCTGGCGCAATGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGG > 2:2822652/1‑100 TGAACTGGCTCGCTTAACGCTGGCGCAATGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGA < 2:3255648/100‑1 GAACTGGCTCGCTTAACGCTGGCGCAATGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGAT > 1:1034466/1‑100 ACTGGCTCGCTTAACGCTGGCGCAATGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGctgg > 2:3258463/1‑96 CAATGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATTGCGCGAAATCGTCACCATCCGGC < 1:2370469/100‑1 attGCAATCAAAACGGTTAATTCCTGTCGCGGTTAGACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATTTCGCGTAATCGTCACCAGCCGGCAA < 1:2167740/97‑1 TGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATTGCGCGTAATCGTCACCATCCGGCAAT < 1:2289352/100‑1 TATTGCCGGATTGCGCGTAATCGTCACCATCCGGCAATATTACGGTGATCCTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCC < 1:1597531/100‑1 TATTGCCGGATTGCGCGTAATCGTCACCATCCGGCAATATTACGGTGATCCTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCC > 2:824673/1‑100 TATTGCCGGATAGCGCGTAATCGTCACCATCCGTCAATATTCCGGTGATCCTATCGAAACAGCGGTTTAACCGCTACAGGAATTAACAGTTGTGATTG < 1:935717/98‑1 ATTGCCGGATTGCGCGTAATCGTCACCATCCGGCAATATTACGGTGATCCTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCCA > 1:285351/1‑100 ATTGCCGGATTGCGCGTAATCGTCACCATCCGGCAATATTACGGTGATCCTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCCA > 1:891540/1‑100 ATTGCCGGATTGCGCGTAATCGTCACCATCCGGCAATATTACGGTGATCCTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCCA > 2:1908883/1‑100 TGCCGGATTGCGCGTAATCGTCACCATCCGGCAATATTACGGTGATCCTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCCATT < 1:1765701/100‑1 CCGGATTGCGCGTAATCGTCACCATCCGGCAATATTACGGTGATCCTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCCATTGC < 2:1754986/100‑1 CGGATTGCGCGTAATCGTCACCATCCGGCAATATTACGGTGATCCTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCCATTGCG < 1:1440870/100‑1 CGGATTGCGCGTAATCGTCACCATCCGGCAATATTACGGTGATCCTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCCATTGCG < 2:775903/100‑1 CGGATTGCGCGTAATCGTCACCATCCGGCAATATTACGGTGATCCTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCCATTGCG > 2:219676/1‑100 CGGATTGCGCGTAATCGTCACCATCCGGCAATATTACGGTGATCCTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCCATTGCG < 1:2334064/100‑1 GGATTGCGCGTAATCGTCACCATCCGGCAATATTACGGTGATCCTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCCATTGCGC > 1:2688809/1‑100 GGATTGCGCGTAATCGTCACCATCCGGCAATATTACGGTGATCCTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCCATTGCGC > 2:292457/1‑100 GATTGCGCGTAATCGTCACCATCCGGCAATATTACGGTGATCCTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCCATTGCGCC < 2:88511/100‑1 GATTGCGCGTAATCGTCACCATCCGGCAATATTACGGTGATCCTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCCATTGCGCC < 1:1001209/100‑1 ATTGCGCGTAATCGTCACCATCCGGCAATATTACTGTGATCCTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCCATTGCGC < 1:1728719/98‑1 TTGCGCGTAATCGTCACCATCCGGCAATATTACGGTGATCCTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCCATTGCGCCAG < 2:2580220/100‑1 CACTGGGTGAACTGGCTCGCTTAACGCTGGCGCAATGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1665035‑1665135‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattGCCGGATTGCGCGTAATCGTCACCATCCGGCAATATTACGGTGATCCTATCGAAACAGCGGTTTAACCGCGACAGGAATTAACAGTTGTGATTGCCATTGCGCCAG < NC_000913/1665166‑1665061 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |