New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2282890	NA (NA)	6 (0.050)	6/164	NT	NA	noncoding (4/34 nt)	REP159 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP159 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 2282920	NA (NA)					noncoding (34/34 nt)	REP159 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP159 (repetitive extragenic palindromic) element; contains 1 REP sequences

GCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGgccagat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2282794‑2282890 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCAGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTTTTTAC  <  NC_000913/2282920‑2282816                                                                                                                                                                                                             GCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCC                                                                                                         <  2:1603160/100‑1  CGCTTACTTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCC                                                                                                         <  1:875315/99‑1  CGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCA                                                                                                        <  2:722093/100‑1  CGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCA                                                                                                        >  2:2781725/1‑100  CGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTACTATTTTTTGCCGGCC                                                                                                         >  1:1242842/1‑99   GCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAG                                                                                                       <  1:920227/100‑1    CTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGA                                                                                                      >  2:1437932/1‑100                        TAAAAAACCCCGCTGCGGCGGGGTTTTTTGTATCTGCAGATTATGCATGATTACGGTATTGCTATTTTTTGCAGGCCAGATGCGGCGTCAACGCCTTATC                                                                                  <  1:1185225/100‑1                            AAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATGCGGCGTGAACGCCTTATCTGGC                                                                              <  1:1931699/100‑1                             AACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATGCGGCGTGAACGCCTTATCTGGCC                                                                             <  2:89130/100‑1                               CCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATGCGGCGTGAACGCCTTATCTGGCCT                                                                            <  1:2977113/99‑1                                CCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATGCGGCGTGAACGCCTTATCTGGCCTGC                                                                          <  2:2534448/100‑1                                         GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATGCGGCGTGAACGCCTTATATGGCCTGCAAAAAATAG                                                                 <  1:360694/100‑1                                                                                                AGGCCAGATAAGGCGTTCACGCCGCATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGG          >  2:1354469/1‑99                                                                                                  GCCAGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTT       >  2:1208355/1‑100                                                                                                  GCCAGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACACCGC‑CGGAGCGGGGTTT       >  1:740781/1‑100                                                                                                   CCAGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTTT      >  2:3098205/1‑100                                                                                                   CCAGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTTT      >  2:3193474/1‑100                                                                                                    CAGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTTgt     <  2:2321163/100‑3                                                                                                    CAGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTTTT     >  1:545200/1‑100                                                                                                    CAGATGCAGCGTGAACGCCTTATCTGGCCTGGAAAAAATAGCAATTCCGTAATCAGGCATAATCTGCAGATACAAAAACCCCCGC‑CGGAGCGGGGTTTTT     <  1:2344428/100‑1                                                                                                     AGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTTTTT    >  1:476401/1‑100                                                                                                     AGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTTTT     <  1:596186/99‑1                                                                                                      GATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGCTCCG‑GCGGGGTTTTTTg   <  1:3054573/100‑2                                                                                                      GATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGCTCCG‑GCGGGGTTTTTTg   <  1:48159/100‑2                                                                                                       ATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTTTTTAC  <  2:2678904/100‑1                                                                                                                                                                                                             GCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGgccagat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2282794‑2282890 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCAGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGC‑CGGAGCGGGGTTTTTTAC  <  NC_000913/2282920‑2282816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.