| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2393131 = | NA (NA) | 10 (0.090) | 8/164 | NT | NA | noncoding (1/36 nt) | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 2393163 = | NA (NA) | noncoding (33/36 nt) | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
GGTGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2393235‑2393131‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgac‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGC > NC_000913/2393163‑2393261 GGTGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCAg < 1:1491859/100‑2 TGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCC < 2:924816/100‑1 TGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCC < 2:2972244/100‑1 TGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCC < 1:2368600/100‑1 CTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGA > 2:437835/1‑100 CTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGA > 1:3090479/1‑100 TGGCACTGTTGATGGTACTGCGTTGTGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC > 1:1831896/1‑100 TGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC > 1:2893895/1‑100 TGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC > 2:2354121/1‑100 GCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGAAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCA > 1:1731586/1‑100 CATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTA > 2:2700392/1‑100 tctGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACAATCAAC < 1:2631505/97‑1 GTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACAATCAACAGa > 2:2631521/1‑99 TAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGT > 1:206085/1‑99 GGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCC > 1:87398/1‑100 GTCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACCTAACGCAGTACCATCAACAGTGCCA > 1:289982/1‑100 tgGGATAAGCCGCCTTCGCGGTGCATCCGACACTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCA > 2:2303445/3‑100 TAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCA > 2:2178046/1‑100 TAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCA > 1:733061/1‑100 ATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCAT < 1:2857667/100‑1 CGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGA > 2:1681423/1‑100 CGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGA < 1:87832/100‑1 CGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGA < 2:2920013/100‑1 CGAC‑CTACGTTCTTATACGCCCAGGGGCAATCCCACAATCCTTCACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGA < 2:307617/100‑1 C‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGATCGCACCGATGCTCATGGATGC > 1:1157687/1‑100 C‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGC > 2:3263052/1‑100 GGTGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2393235‑2393131‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgac‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGC > NC_000913/2393163‑2393261 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |